Variant report

Variant	rs577950907
Chromosome Location	chr4:80413490-80413491
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:80413489-80413539	A549	lung:	n/a
2	chr4:80413489-80413539	SK-N-MC	brain:	n/a
3	chr4:80413489-80413539	PFSK-1	brain:	n/a
4	chr4:80413489-80413539	SK-N-SH	brain:	n/a
5	chr4:80413489-80413539	HNPCEpiC	eye:	n/a
6	chr4:80413489-80413539	NHBE	bronchial:	n/a
7	chr4:80413489-80413539	HUVEC	blood vessel:	n/a
8	chr4:80413489-80413539	AG09309	skin:	n/a
9	chr4:80413489-80413539	H1-hESC	embryonic stem cell:	embryo
10	chr4:80413489-80413539	ovcar-3	ovarian:	n/a
11	chr4:80413489-80413539	RPTEC	kidney:	n/a
12	chr4:80413489-80413539	SK-N-SH_RA	brain:	n/a
13	chr4:80413489-80413539	NH-A	brain:	n/a
14	chr4:80413489-80413539	GM12878	blood:	n/a
15	chr4:80413489-80413539	HMEC	breast:	n/a
16	chr4:80413489-80413539	CMK	blood:	n/a
17	chr4:80413489-80413539	Hela-S3	cervix:	n/a
18	chr4:80413489-80413539	BE2_C	brain:	n/a
19	chr4:80413489-80413539	PrEC	prostate:	n/a
20	chr4:80413489-80413539	HCT-116	colon:	n/a
21	chr4:80413489-80413539	HL-60	blood:	n/a
22	chr4:80413489-80413539	GM19239	blood:	n/a
23	chr4:80413489-80413539	Jurkat	blood:	n/a
24	chr4:80413489-80413539	HRCEpiC	kidney:	n/a
25	chr4:80413489-80413539	AG10803	skin:	n/a
26	chr4:80413489-80413539	K562	blood:	n/a
27	chr4:80413489-80413539	NB4	blood:	n/a
28	chr4:80413489-80413539	ECC-1	luminal epithelium:	n/a
29	chr4:80413489-80413539	T-47D	breast:	n/a
30	chr4:80413489-80413539	Caco-2	colon:	n/a
31	chr4:80413489-80413539	GM06990	blood:	n/a
32	chr4:80413489-80413539	HAEpiC	amniotic membrane:	n/a
33	chr4:80413489-80413539	HepG2	liver:	n/a
34	chr4:80413489-80413539	MCF10A-Er-Src	breast:	n/a
35	chr4:80413489-80413539	HIPEpiC	eye:	n/a
36	chr4:80413489-80413539	GM12891	blood:	n/a
37	chr4:80413489-80413539	NT2-D1	testis:	n/a
38	chr4:80413489-80413539	GM12892	blood:	n/a
39	chr4:80413489-80413539	AG04450	lung:	fetal
40	chr4:80413489-80413539	HCM	heart:	n/a
41	chr4:80413489-80413539	U87	brain:	n/a
42	chr4:80413489-80413539	NHDF-neo	bronchial:	n/a
43	chr4:80413489-80413539	LNCaP	prostate:	n/a
44	chr4:80413489-80413539	HEK293	kidney:	embryo
45	chr4:80413489-80413539	HPAEpiC	pulmonary alveolar:	n/a
46	chr4:80413489-80413539	HCF	heart:	n/a
47	chr4:80413489-80413539	MCF-7	breast:	n/a
48	chr4:80413489-80413539	SAEC	small airway:	n/a
49	chr4:80413489-80413539	HCPEpiC	choroid plexus:	n/a
50	chr4:80413489-80413539	AG09319	gingival:	n/a

No data

Variant related genes	Relation type
LINC00989	CpG island

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999174	chr4:80212935-80512356	Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3432913	chr4:80274683-80416584	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv879506	chr4:80316417-80604625	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv879507	chr4:80365765-80552199	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv879508	chr4:80398708-80552199	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:80413200-80413600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:80413200-80413600	Enhancers	Left Ventricle	heart
3	chr4:80413200-80413600	Enhancers	Right Atrium	heart
4	chr4:80413400-80413800	Flanking Active TSS	Adipose Nuclei	Adipose
5	chr4:80413400-80415800	Weak transcription	Aorta	Aorta

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