Variant report

Variant	rs577953407
Chromosome Location	chr6:27143877-27143878
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:27143119..27145286-chr6:27470230..27472142,2	K562	blood:
2	chr6:27142668..27145341-chr6:27807841..27810817,2	K562	blood:
3	chr6:27130156..27130801-chr6:27143845..27144827,2	K562	blood:
4	chr6:27135834..27138150-chr6:27143711..27145656,3	MCF-7	breast:
5	chr6:27143412..27146140-chr6:27152536..27156532,5	K562	blood:
6	chr6:27142864..27146588-chr6:27859215..27861126,3	K562	blood:
7	chr6:27143738..27145587-chr6:27441019..27442990,2	K562	blood:
8	chr6:27143840..27145814-chr6:27177507..27180295,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000233224	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000174572	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases
2	esv3336259	chr6:27143325-27143927	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27137400-27144000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:27137600-27144000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:27138200-27144000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:27141000-27144400	Weak transcription	Fetal Kidney	kidney
5	chr6:27143000-27144000	Weak transcription	Fetal Thymus	thymus
6	chr6:27143400-27144000	Enhancers	K562	blood
7	chr6:27143800-27144000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:27143800-27144000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr6:27143800-27144000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:27143800-27144000	Enhancers	NHLF	lung
11	chr6:27143800-27144200	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr6:27143800-27144200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:27143800-27144200	Enhancers	Fetal Muscle Trunk	muscle
14	chr6:27143800-27144200	Enhancers	Dnd41	blood
15	chr6:27143800-27144200	Flanking Active TSS	HSMMtube	muscle
16	chr6:27143800-27144400	Flanking Active TSS	Hela-S3	cervix
17	chr6:27143800-27144600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:27143800-27146200	Active TSS	Placenta	Placenta
19	chr6:27143800-27146800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:27143800-27146800	Active TSS	Fetal Lung	lung
21	chr6:27143800-27146800	Active TSS	Skeletal Muscle Male	skeletal muscle
22	chr6:27143800-27147000	Active TSS	HSMM	muscle
23	chr6:27143800-27147400	Active TSS	ES-I3 Cell Line	embryonic stem cell
24	chr6:27143800-27147400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
25	chr6:27143800-27147600	Active TSS	H9 Cell Line	embryonic stem cell
26	chr6:27143800-27147600	Active TSS	HUES6 Cell Line	embryonic stem cell

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