Variant report

Variant	rs577957864
Chromosome Location	chr12:10103743-10103744
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr12:10103697-10104033	NB4	blood:	n/a	n/a
2	RUNX3	chr12:10103624-10104022	GM12878	blood:	n/a	n/a
3	RUNX3	chr12:10103626-10104073	GM12878	blood:	n/a	n/a
4	MYC	chr12:10103616-10103972	NB4	blood:	n/a	n/a
5	EBF1	chr12:10103687-10103960	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:9907740..9910735-chr12:10101487..10103775,2	K562	blood:

Variant related genes	Relation type
CLEC12A	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044587	chr12:10029514-10123414	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv523050	chr12:10031880-10124373	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv898755	chr12:10069302-10186284	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv975404	chr12:10102404-10114263	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10096400-10104800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr12:10099400-10104800	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr12:10100600-10104800	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr12:10100600-10104800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr12:10100800-10104800	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr12:10101000-10104800	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr12:10101800-10104800	Enhancers	Fetal Thymus	thymus
8	chr12:10102000-10104000	Weak transcription	Placenta	Placenta
9	chr12:10102200-10104600	Enhancers	GM12878-XiMat	blood
10	chr12:10102800-10103800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr12:10102800-10104800	Enhancers	Primary B cells from peripheral blood	blood
12	chr12:10103000-10104800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr12:10103000-10104800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr12:10103200-10104800	Enhancers	Primary hematopoietic stem cells	blood
15	chr12:10103400-10103800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr12:10103400-10104200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr12:10103400-10104400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
18	chr12:10103400-10104600	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr12:10103400-10104600	Enhancers	Primary B cells from cord blood	blood
20	chr12:10103400-10104600	Flanking Active TSS	Primary T cells from cord blood	blood
21	chr12:10103400-10104600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr12:10103400-10104600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
23	chr12:10103400-10104800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
24	chr12:10103600-10103800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr12:10103600-10104400	Flanking Active TSS	Dnd41	blood
26	chr12:10103600-10104600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
27	chr12:10103600-10104600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr12:10103600-10104600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr12:10103600-10104600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
30	chr12:10103600-10104600	Enhancers	Thymus	Thymus
31	chr12:10103600-10105200	Enhancers	Primary T cells fromperipheralblood	blood

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