Variant report

Variant	rs577959054
Chromosome Location	chr14:65726688-65726689
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65687724..65702236-chr14:65717995..65729217,67	MCF-7	breast:
2	chr14:65725388..65728499-chr14:65821707..65823714,3	MCF-7	breast:
3	chr14:65689123..65699940-chr14:65718655..65726829,32	MCF-7	breast:
4	chr14:65721905..65725444-chr14:65725472..65730269,4	MCF-7	breast:
5	chr14:65720143..65726834-chr14:65876571..65883583,24	MCF-7	breast:
6	chr14:65718344..65729728-chr14:65875413..65882756,31	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258878	Chromatin interaction
ENSG00000033170	Chromatin interaction
ENSG00000255002	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv832818	chr14:65706859-65882320	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
4	esv3330142	chr14:65726565-65727458	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65697200-65746800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:65714000-65735400	Weak transcription	Primary B cells from cord blood	blood
3	chr14:65721600-65727000	Enhancers	HUVEC	blood vessel
4	chr14:65722200-65728400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr14:65723200-65726800	Weak transcription	Gastric	stomach
6	chr14:65723200-65727200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr14:65723400-65726800	Weak transcription	Primary T cells from cord blood	blood
8	chr14:65723400-65727000	Enhancers	Hela-S3	cervix
9	chr14:65724000-65728800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr14:65724400-65728200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr14:65724400-65728400	Enhancers	NHDF-Ad	bronchial
12	chr14:65725400-65727200	Weak transcription	NH-A	brain
13	chr14:65725400-65730000	Weak transcription	HSMM	muscle
14	chr14:65725600-65727200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr14:65725600-65727200	Weak transcription	Osteobl	bone
16	chr14:65725600-65728000	Weak transcription	HepG2	liver
17	chr14:65726000-65726800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr14:65726000-65729800	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr14:65726200-65726800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr14:65726200-65726800	Weak transcription	HMEC	breast
21	chr14:65726200-65727000	Weak transcription	NHLF	lung
22	chr14:65726600-65727600	Enhancers	Stomach Mucosa	stomach

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