Variant report

Variant	rs57796856
Chromosome Location	chr11:74338355-74338356
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10219203	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10793092	0.82[ASN][1000 genomes]
rs10793093	0.89[ASN][1000 genomes]
rs10793094	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10793098	0.87[ASN][1000 genomes]
rs10899009	0.81[ASN][1000 genomes]
rs10899020	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10899024	0.96[ASN][1000 genomes]
rs11236158	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11236161	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11236164	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11236178	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11236182	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11236185	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11236187	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11236188	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11236189	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11604752	0.81[ASN][1000 genomes]
rs12282266	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12421429	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1944933	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2117222	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2155935	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2298792	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3824999	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4145954	0.96[ASN][1000 genomes]
rs4644667	0.89[ASN][1000 genomes]
rs58659624	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs59830047	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60085010	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7103197	0.90[ASN][1000 genomes]
rs7121958	0.83[ASN][1000 genomes]
rs7124188	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72977282	0.92[ASN][1000 genomes]
rs7924706	0.96[ASN][1000 genomes]
rs7932922	0.96[ASN][1000 genomes]
rs7937753	0.96[ASN][1000 genomes]
rs7940880	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757451	chr11:73842609-74545888	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv2759837	chr11:73842609-74557597	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	esv34979	chr11:73878688-74533452	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	esv2758277	chr11:73887567-74557597	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	nsv825994	chr11:73936667-74534455	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74304400-74345600	Weak transcription	Gastric	stomach
2	chr11:74304600-74345600	Weak transcription	Esophagus	oesophagus
3	chr11:74304600-74373800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:74304800-74357800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr11:74304800-74361400	Weak transcription	Colonic Mucosa	Colon
6	chr11:74310200-74352400	Weak transcription	Fetal Brain Male	brain
7	chr11:74311800-74340600	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr11:74314000-74370200	Weak transcription	Psoas Muscle	Psoas
9	chr11:74317200-74345600	Weak transcription	Pancreas	Pancrea
10	chr11:74317200-74352200	Weak transcription	Aorta	Aorta
11	chr11:74317400-74344200	Weak transcription	Small Intestine	intestine
12	chr11:74319200-74366000	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr11:74321600-74364800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:74322200-74357400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:74323000-74342000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr11:74323000-74356800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr11:74324000-74345600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr11:74324200-74345600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr11:74324400-74346600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr11:74324800-74344600	Weak transcription	NH-A	brain
21	chr11:74325000-74342200	Weak transcription	Rectal Smooth Muscle	rectum
22	chr11:74325000-74345400	Weak transcription	Brain Angular Gyrus	brain
23	chr11:74325000-74345600	Weak transcription	Spleen	Spleen
24	chr11:74325000-74346400	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr11:74325000-74351600	Weak transcription	Right Ventricle	heart
26	chr11:74325200-74347000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr11:74325200-74351000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:74325400-74345600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr11:74325400-74346200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr11:74325600-74350600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr11:74326000-74345200	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr11:74328200-74341600	Weak transcription	Colon Smooth Muscle	Colon
33	chr11:74328400-74345600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr11:74329800-74346400	Weak transcription	Fetal Intestine Small	intestine
35	chr11:74330000-74343400	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr11:74330000-74345600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr11:74330200-74342200	Weak transcription	NHEK	skin
38	chr11:74330200-74342600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr11:74330200-74345600	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr11:74330200-74346200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr11:74330200-74351600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr11:74330800-74340000	Weak transcription	HUVEC	blood vessel
43	chr11:74331200-74345600	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr11:74331400-74344200	Weak transcription	Placenta	Placenta
45	chr11:74331400-74346000	Weak transcription	HepG2	liver
46	chr11:74331400-74383400	Weak transcription	Brain Substantia Nigra	brain
47	chr11:74331600-74345600	Weak transcription	Liver	Liver
48	chr11:74331600-74346200	Weak transcription	Brain Hippocampus Middle	brain
49	chr11:74331800-74345600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr11:74332000-74339800	Weak transcription	Fetal Kidney	kidney

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