Variant report

Variant	rs577986281
Chromosome Location	chr20:23855774-23855775
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491876	chr20:23436633-24031374	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv833944	chr20:23806288-24021865	Bivalent Enhancer Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv585730	chr20:23809681-23862844	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3411629	chr20:23855752-23860150	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23848800-23860400	Enhancers	Fetal Thymus	thymus
2	chr20:23851400-23859400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr20:23852400-23864800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr20:23852800-23858200	Enhancers	Dnd41	blood
5	chr20:23853400-23856800	Enhancers	Thymus	Thymus
6	chr20:23854000-23855800	Enhancers	Primary T cells from cord blood	blood
7	chr20:23854600-23858200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr20:23854800-23860600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr20:23855200-23856000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
10	chr20:23855200-23856000	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr20:23855200-23857600	Enhancers	Stomach Smooth Muscle	stomach
12	chr20:23855400-23855800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr20:23855400-23858000	Weak transcription	Spleen	Spleen
14	chr20:23855400-23858200	Enhancers	Fetal Stomach	stomach
15	chr20:23855600-23855800	Enhancers	H1 Cell Line	embryonic stem cell
16	chr20:23855600-23855800	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr20:23855600-23855800	Enhancers	Fetal Intestine Large	intestine
18	chr20:23855600-23856600	Enhancers	Fetal Muscle Trunk	muscle
19	chr20:23855600-23856800	Enhancers	Rectal Smooth Muscle	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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