Variant report

Variant	rs577993834
Chromosome Location	chr17:67239832-67239833
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:67237020..67239895-chr17:67240167..67242390,3	MCF-7	breast:
2	chr17:67235995..67239986-chr17:67240583..67244208,4	K562	blood:

Variant related genes	Relation type
ENSG00000154263	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv575932	chr17:67149973-67327806	Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv457889	chr17:67210992-67332355	Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	n/a
3	nsv575934	chr17:67210992-67332355	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	n/a
4	nsv1055156	chr17:67239695-67272311	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67207600-67247800	Weak transcription	Left Ventricle	heart
2	chr17:67215600-67249200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr17:67224600-67248600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr17:67230600-67241400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr17:67230600-67259600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr17:67230800-67253400	Weak transcription	Fetal Muscle Leg	muscle
7	chr17:67230800-67271800	Weak transcription	Pancreas	Pancrea
8	chr17:67231600-67246600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr17:67231800-67247000	Weak transcription	Primary T cells from cord blood	blood
10	chr17:67231800-67247000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr17:67231800-67247000	Weak transcription	HUVEC	blood vessel
12	chr17:67231800-67249000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr17:67231800-67252600	Weak transcription	Fetal Thymus	thymus
14	chr17:67231800-67254400	Weak transcription	Lung	lung
15	chr17:67232600-67249000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr17:67233600-67245000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr17:67234400-67240200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr17:67234600-67249200	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr17:67234800-67250600	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr17:67235000-67289000	Weak transcription	Primary hematopoietic stem cells	blood
21	chr17:67235200-67240000	Strong transcription	Skeletal Muscle Female	skeletal muscle
22	chr17:67236000-67283000	Weak transcription	Ovary	ovary
23	chr17:67236400-67252400	Weak transcription	Fetal Lung	lung
24	chr17:67236400-67278000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr17:67236600-67241400	Weak transcription	Brain Hippocampus Middle	brain
26	chr17:67236600-67241800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr17:67236600-67248600	Weak transcription	Brain Cingulate Gyrus	brain
28	chr17:67236600-67251600	Weak transcription	Rectal Smooth Muscle	rectum
29	chr17:67236800-67240000	Strong transcription	Fetal Intestine Large	intestine
30	chr17:67236800-67249000	Weak transcription	Brain Anterior Caudate	brain
31	chr17:67236800-67280800	Weak transcription	Brain Angular Gyrus	brain
32	chr17:67236800-67298800	Weak transcription	Psoas Muscle	Psoas
33	chr17:67237200-67244600	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr17:67237200-67246400	Weak transcription	Aorta	Aorta
35	chr17:67237800-67241400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr17:67237800-67241400	Weak transcription	NHEK	skin
37	chr17:67237800-67247000	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr17:67238200-67248600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr17:67238600-67247400	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr17:67238800-67240000	Strong transcription	Primary T cells fromperipheralblood	blood
41	chr17:67238800-67278000	Weak transcription	Thymus	Thymus
42	chr17:67239000-67240000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr17:67239200-67240000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr17:67239200-67240000	Strong transcription	Adipose Nuclei	Adipose
45	chr17:67239200-67240200	Strong transcription	Rectal Mucosa Donor 31	rectum
46	chr17:67239200-67240400	Strong transcription	Liver	Liver
47	chr17:67239200-67241800	Weak transcription	GM12878-XiMat	blood
48	chr17:67239200-67248400	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr17:67239200-67262400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr17:67239400-67240000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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