Variant report

Variant	rs578002053
Chromosome Location	chr1:93004400-93004401
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523354	chr1:92931263-93064823	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1004381	chr1:92968173-93064823	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv830603	chr1:93003657-93172206	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92968200-93042800	Weak transcription	HSMM	muscle
2	chr1:92972600-93013400	Weak transcription	Ovary	ovary
3	chr1:92976400-93042400	Weak transcription	Fetal Stomach	stomach
4	chr1:92977600-93010600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr1:92977600-93013200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr1:92981800-93033400	Weak transcription	NHEK	skin
7	chr1:92983600-93066200	Weak transcription	Adipose Nuclei	Adipose
8	chr1:92993000-93007400	Weak transcription	Left Ventricle	heart
9	chr1:92993800-93007200	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr1:92994600-93066000	Weak transcription	Placenta	Placenta
11	chr1:92999400-93016600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr1:93001400-93024200	Weak transcription	Psoas Muscle	Psoas
13	chr1:93001600-93004600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr1:93001600-93004600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr1:93001800-93004600	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr1:93001800-93004600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr1:93001800-93004600	Enhancers	HepG2	liver
18	chr1:93001800-93004800	Enhancers	HUVEC	blood vessel
19	chr1:93002200-93004400	Enhancers	Primary hematopoietic stem cells	blood
20	chr1:93002200-93004800	Enhancers	NH-A	brain
21	chr1:93002400-93004800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr1:93002600-93004600	Enhancers	Osteobl	bone
23	chr1:93002800-93004800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr1:93002800-93007400	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr1:93003600-93004400	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr1:93003600-93004400	Enhancers	Primary B cells from cord blood	blood
27	chr1:93003600-93004400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
28	chr1:93003600-93004400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
29	chr1:93003600-93004400	Enhancers	Fetal Intestine Large	intestine
30	chr1:93003600-93004600	Enhancers	Primary T helper cells fromperipheralblood	blood
31	chr1:93003600-93004600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
32	chr1:93003600-93004800	Enhancers	Stomach Mucosa	stomach
33	chr1:93003800-93004400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr1:93003800-93004400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
35	chr1:93003800-93004800	Enhancers	Liver	Liver
36	chr1:93003800-93004800	Flanking Active TSS	GM12878-XiMat	blood
37	chr1:93003800-93005000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
38	chr1:93004000-93004400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr1:93004000-93004400	Enhancers	Primary B cells from peripheral blood	blood
40	chr1:93004000-93004400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
41	chr1:93004000-93004400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
42	chr1:93004000-93004400	Enhancers	Colonic Mucosa	Colon
43	chr1:93004000-93004400	Enhancers	Fetal Thymus	thymus
44	chr1:93004000-93004400	Enhancers	Thymus	Thymus
45	chr1:93004000-93004600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
46	chr1:93004000-93004600	Enhancers	Pancreatic Islets	Pancreatic Islet
47	chr1:93004000-93005000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
48	chr1:93004000-93005000	Enhancers	Small Intestine	intestine
49	chr1:93004000-93005600	Enhancers	Primary T cells from cord blood	blood
50	chr1:93004000-93005800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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