Variant report

Variant	rs578022239
Chromosome Location	chr7:57896722-57896723
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:57896675-57896725	SK-N-MC	brain:	n/a
2	chr7:57896675-57896725	HPAEpiC	pulmonary alveolar:	n/a
3	chr7:57896675-57896725	SAEC	small airway:	n/a
4	chr7:57896675-57896725	MCF-7	breast:	n/a
5	chr7:57896675-57896725	GM12892	blood:	n/a
6	chr7:57896675-57896725	ECC-1	luminal epithelium:	n/a
7	chr7:57896675-57896725	HEEpiC	esophagus:	n/a
8	chr7:57896675-57896725	NHBE	bronchial:	n/a
9	chr7:57896675-57896725	GM12891	blood:	n/a
10	chr7:57896675-57896725	PFSK-1	brain:	n/a
11	chr7:57896675-57896725	HRPEpiC	eye:	n/a
12	chr7:57896675-57896725	HRCEpiC	kidney:	n/a
13	chr7:57896675-57896725	AoSMC	blood vessel:	n/a
14	chr7:57896675-57896725	K562	blood:	n/a
15	chr7:57896675-57896725	SK-N-SH	brain:	n/a
16	chr7:57896675-57896725	PrEC	prostate:	n/a
17	chr7:57896675-57896725	A549	lung:	n/a
18	chr7:57896675-57896725	HUVEC	blood vessel:	n/a
19	chr7:57896675-57896725	U87	brain:	n/a
20	chr7:57896675-57896725	AG04450	lung:	fetal
21	chr7:57896675-57896725	HNPCEpiC	eye:	n/a
22	chr7:57896675-57896725	HAEpiC	amniotic membrane:	n/a
23	chr7:57896675-57896725	SKMC	muscle:	n/a
24	chr7:57896675-57896725	BE2_C	brain:	n/a
25	chr7:57896675-57896725	NH-A	brain:	n/a
26	chr7:57896675-57896725	HL-60	blood:	n/a
27	chr7:57896675-57896725	IMR90	lung:	fetal
28	chr7:57896675-57896725	GM19239	blood:	n/a
29	chr7:57896675-57896725	Caco-2	colon:	n/a
30	chr7:57896675-57896725	HepG2	liver:	n/a
31	chr7:57896675-57896725	NT2-D1	testis:	n/a
32	chr7:57896675-57896725	GM12878	blood:	n/a
33	chr7:57896675-57896725	HCM	heart:	n/a
34	chr7:57896675-57896725	HCT-116	colon:	n/a
35	chr7:57896675-57896725	AG04449	skin:	fetal
36	chr7:57896675-57896725	Hela-S3	cervix:	n/a
37	chr7:57896675-57896725	MCF10A-Er-Src	breast:	n/a
38	chr7:57896675-57896725	GM06990	blood:	n/a
39	chr7:57896675-57896725	ovcar-3	ovarian:	n/a
40	chr7:57896675-57896725	AG10803	skin:	n/a
41	chr7:57896675-57896725	NHDF-neo	bronchial:	n/a
42	chr7:57896675-57896725	Jurkat	blood:	n/a
43	chr7:57896675-57896725	HMEC	breast:	n/a
44	chr7:57896675-57896725	HCF	heart:	n/a
45	chr7:57896675-57896725	AG09309	skin:	n/a
46	chr7:57896675-57896725	T-47D	breast:	n/a
47	chr7:57896675-57896725	HIPEpiC	eye:	n/a
48	chr7:57896675-57896725	ProgFib	skin:	n/a
49	chr7:57896675-57896725	Hepatocyte	liver:	n/a
50	chr7:57896675-57896725	NB4	blood:	n/a

No data

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF716-24	chr7:57896673-57896752	NONHSAT120882

No data

Variant related genes	Relation type
ENSG00000271696	CpG island

Extended variants
information (count: 41 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:41 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607048	chr7:57190580-58018981	ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	44 gene(s)	inside rSNPs	diseases
2	esv2761119	chr7:57190580-58019970	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	44 gene(s)	inside rSNPs	diseases
3	nsv1029476	chr7:57260920-58019983	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
4	esv2752161	chr7:57275833-57919980	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
5	nsv1030441	chr7:57288140-58019983	Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
6	nsv1020184	chr7:57318828-58019983	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
7	nsv1015195	chr7:57334076-58019983	ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
8	nsv1019359	chr7:57473854-58019983	Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
9	esv2752832	chr7:57476143-57919943	ZNF genes & repeats Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
10	esv2752162	chr7:57476164-57919980	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
11	esv2758611	chr7:57586049-57959574	ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
12	esv2759532	chr7:57586049-57959574	Bivalent/Poised TSS ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
13	nsv1024942	chr7:57586049-58019983	Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
14	nsv433384	chr7:57633285-58029051	Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
15	nsv1025576	chr7:57697923-58019983	Active TSS Bivalent/Poised TSS ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	TF binding region CpG island lncRNA	20 gene(s)	inside rSNPs	diseases
16	nsv1023594	chr7:57721276-58019983	ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island lncRNA	13 gene(s)	inside rSNPs	diseases
17	nsv981487	chr7:57740775-57932576	ZNF genes & repeats Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island lncRNA	13 gene(s)	inside rSNPs	diseases
18	nsv1016501	chr7:57780599-58019983	ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers	TF binding region CpG island lncRNA	13 gene(s)	inside rSNPs	diseases
19	nsv1016244	chr7:57783619-58019983	Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island lncRNA	13 gene(s)	inside rSNPs	diseases
20	nsv1023283	chr7:57800875-57950919	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS	TF binding region CpG island lncRNA	13 gene(s)	inside rSNPs	diseases
21	nsv1033455	chr7:57800875-58019983	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island lncRNA	13 gene(s)	inside rSNPs	diseases
22	nsv1017454	chr7:57819767-58019983	ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island lncRNA	13 gene(s)	inside rSNPs	diseases
23	nsv1025944	chr7:57829001-57924987	ZNF genes & repeats Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	13 gene(s)	inside rSNPs	diseases
24	nsv1023705	chr7:57832030-57914385	ZNF genes & repeats Enhancers Active TSS Weak transcription	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
25	nsv442050	chr7:57840043-57923947	ZNF genes & repeats Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	9 gene(s)	inside rSNPs	diseases
26	nsv1026010	chr7:57855143-58019983	ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
27	nsv1034211	chr7:57855144-58019983	ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
28	nsv1032446	chr7:57855343-58019983	ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
29	nsv8099	chr7:57876606-57914599	ZNF genes & repeats Enhancers Weak transcription Active TSS	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
30	esv3366330	chr7:57877410-57920608	ZNF genes & repeats Enhancers Weak transcription Active TSS	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
31	esv20635	chr7:57881957-57914393	ZNF genes & repeats Enhancers	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
32	nsv821177	chr7:57881957-57914393	ZNF genes & repeats Enhancers	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
33	esv3420596	chr7:57883010-57925508	Active TSS ZNF genes & repeats Weak transcription Enhancers	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
34	esv3323111	chr7:57883710-57920508	Enhancers Active TSS ZNF genes & repeats Weak transcription	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
35	esv3333595	chr7:57883710-57920608	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
36	nsv1016844	chr7:57885901-58019983	Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
37	nsv1029423	chr7:57885902-58019983	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
38	nsv1020882	chr7:57886101-58019983	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
39	nsv971372	chr7:57894447-57906873	Inactive region	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
40	esv3399131	chr7:57894610-57916008	Inactive region	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
41	esv3359198	chr7:57895310-57920608	Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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