Variant report

Variant	rs57804096
Chromosome Location	chr20:23022439-23022440
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2092634	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2092635	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2092636	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2103760	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs220987	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs220988	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs220989	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2235953	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2567607	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2746620	0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2746621	0.94[AMR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23016000-23026000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr20:23016200-23028200	Weak transcription	Aorta	Aorta
3	chr20:23016600-23023600	Weak transcription	Gastric	stomach
4	chr20:23017600-23024600	Weak transcription	Spleen	Spleen
5	chr20:23020800-23026400	Weak transcription	A549	lung
6	chr20:23021000-23023600	Weak transcription	Esophagus	oesophagus
7	chr20:23021000-23026800	Weak transcription	HMEC	breast
8	chr20:23021400-23025200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr20:23021600-23026400	Weak transcription	Lung	lung
10	chr20:23021600-23027000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr20:23022200-23022800	Enhancers	Right Atrium	heart
12	chr20:23022200-23023000	Enhancers	H9 Cell Line	embryonic stem cell
13	chr20:23022200-23023800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
14	chr20:23022200-23024200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
15	chr20:23022400-23023600	Enhancers	H1 Cell Line	embryonic stem cell
16	chr20:23022400-23024800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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