Variant report

Variant	rs57805490
Chromosome Location	chr3:157349218-157349219
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs58481784	1.00[AMR][1000 genomes]
rs58744004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6441141	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6783082	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6783134	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73876342	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829767	chr3:157306411-157490444	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157348200-157351400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:157348800-157349600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:157349000-157350000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:157349000-157350400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:157349200-157349800	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:157349200-157349800	Enhancers	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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