Variant report

Variant	rs578061762
Chromosome Location	chr7:50476856-50476857
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:50467942..50470799-chr7:50474362..50477015,2	K562	blood:
2	chr7:50474039..50475833-chr7:50475901..50477677,2	K562	blood:
3	chr7:50475535..50477063-chr7:50479519..50481899,2	K562	blood:
4	chr7:50473369..50477129-chr7:50477815..50481019,4	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv515738	chr7:50476109-50494207	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50467000-50477200	Weak transcription	Colonic Mucosa	Colon
2	chr7:50468200-50479800	Weak transcription	Gastric	stomach
3	chr7:50469000-50480600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:50470600-50485600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr7:50470800-50477400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr7:50472200-50483800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr7:50472400-50486400	Enhancers	Primary B cells from peripheral blood	blood
8	chr7:50472600-50477400	Weak transcription	Dnd41	blood
9	chr7:50472600-50479000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr7:50473200-50477000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr7:50473400-50477600	Enhancers	GM12878-XiMat	blood
12	chr7:50473600-50477400	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr7:50474000-50479600	Enhancers	Fetal Thymus	thymus
14	chr7:50474400-50478200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr7:50474400-50483600	Enhancers	Primary B cells from cord blood	blood
16	chr7:50475000-50477600	Weak transcription	Primary T cells from cord blood	blood
17	chr7:50475000-50477600	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr7:50475200-50477800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr7:50475400-50477000	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr7:50475400-50477800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr7:50475400-50483800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr7:50475600-50478000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr7:50476200-50477000	Enhancers	Spleen	Spleen
24	chr7:50476200-50477200	Weak transcription	Thymus	Thymus
25	chr7:50476200-50479600	Enhancers	Primary hematopoietic stem cells	blood
26	chr7:50476400-50477600	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr7:50476600-50479400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr7:50476600-50479600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr7:50476600-50479800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
30	chr7:50476800-50477200	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr7:50476800-50478600	Enhancers	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links