Variant report

Variant	rs578078269
Chromosome Location	chr3:134369046-134369047
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877510	chr3:134126150-134400448	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv877512	chr3:134174071-134372486	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv877513	chr3:134174071-134379752	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv877514	chr3:134191938-134372486	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	esv3343656	chr3:134368312-134371210	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134361600-134369600	Weak transcription	Pancreas	Pancrea
2	chr3:134363400-134369200	Weak transcription	Adipose Nuclei	Adipose
3	chr3:134363800-134369400	Weak transcription	Ovary	ovary
4	chr3:134364400-134369200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr3:134364400-134369200	Weak transcription	Spleen	Spleen
6	chr3:134364400-134369400	Weak transcription	HSMMtube	muscle
7	chr3:134365000-134369400	Weak transcription	Right Atrium	heart
8	chr3:134367000-134369800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
9	chr3:134367800-134369200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr3:134368200-134371200	Flanking Active TSS	Stomach Smooth Muscle	stomach
11	chr3:134368400-134371800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
12	chr3:134368600-134369200	Enhancers	Right Ventricle	heart
13	chr3:134368600-134369400	Flanking Active TSS	Fetal Heart	heart
14	chr3:134368600-134369600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
15	chr3:134368600-134370200	Active TSS	Rectal Smooth Muscle	rectum
16	chr3:134368800-134369400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
17	chr3:134368800-134369600	Flanking Active TSS	Osteobl	bone
18	chr3:134368800-134370200	Active TSS	Brain Angular Gyrus	brain
19	chr3:134368800-134370200	Active TSS	Brain Hippocampus Middle	brain
20	chr3:134368800-134370200	Active TSS	Brain Substantia Nigra	brain
21	chr3:134369000-134369200	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
22	chr3:134369000-134369200	Active TSS	Duodenum Smooth Muscle	Duodenum
23	chr3:134369000-134369200	Bivalent Enhancer	Fetal Brain Female	brain
24	chr3:134369000-134369200	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle
25	chr3:134369000-134369200	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
26	chr3:134369000-134369200	Weak transcription	Left Ventricle	heart
27	chr3:134369000-134369200	Weak transcription	Psoas Muscle	Psoas
28	chr3:134369000-134369200	Enhancers	NH-A	brain
29	chr3:134369000-134369400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr3:134369000-134369400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr3:134369000-134369400	Flanking Active TSS	NHDF-Ad	bronchial
32	chr3:134369000-134370000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr3:134369000-134370400	Active TSS	Brain Inferior Temporal Lobe	brain
34	chr3:134369000-134370600	Active TSS	Colon Smooth Muscle	Colon
35	chr3:134369000-134370600	Active TSS	Pancreatic Islets	Pancreatic Islet
36	chr3:134369000-134370800	Active TSS	Brain Anterior Caudate	brain

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