Variant report

Variant	rs57809382
Chromosome Location	chr12:103591852-103591853
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11111505	0.80[EUR][1000 genomes]
rs17033545	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73381891	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73383835	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832501	chr12:103463927-103648825	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv899476	chr12:103568316-103619085	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv430531	chr12:103580090-103605121	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103591000-103592400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr12:103591200-103592000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr12:103591400-103592000	Enhancers	H9 Cell Line	embryonic stem cell
4	chr12:103591400-103592400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr12:103591600-103592000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr12:103591600-103592200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr12:103591600-103592200	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr12:103591600-103592400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr12:103591600-103592400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr12:103591800-103592400	Enhancers	H1 Cell Line	embryonic stem cell
11	chr12:103591800-103592400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links