Variant report

Variant	rs578119759
Chromosome Location	chr15:74724918-74724919
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74676164..74677951-chr15:74723828..74725756,2	MCF-7	breast:
2	chr15:74724666..74727655-chr15:74741238..74745335,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138629	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
2	nsv904355	chr15:74697084-74728149	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
3	nsv904356	chr15:74697084-74729603	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
4	nsv569974	chr15:74701200-74727113	Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
5	nsv904360	chr15:74709071-74728149	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
6	nsv904364	chr15:74709975-74728149	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
7	nsv904367	chr15:74710125-74728149	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
8	nsv904368	chr15:74711122-74728149	Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
9	nsv542433	chr15:74714265-74745033	Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv904371	chr15:74719249-74731330	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
11	esv3322653	chr15:74724424-74727272	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74713200-74725000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
2	chr15:74713400-74725200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr15:74716200-74725000	Weak transcription	A549	lung
4	chr15:74716600-74725000	Weak transcription	Right Atrium	heart
5	chr15:74720200-74725200	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr15:74720600-74725400	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr15:74721200-74726400	Active TSS	Primary T helper cells PMA-I stimulated	--
8	chr15:74722400-74725200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr15:74722800-74725000	Transcr. at gene 5' and 3'	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr15:74722800-74725000	Flanking Active TSS	Brain Hippocampus Middle	brain
11	chr15:74722800-74725000	Flanking Active TSS	Placenta	Placenta
12	chr15:74723200-74725000	Flanking Active TSS	Brain Cingulate Gyrus	brain
13	chr15:74723200-74725000	Flanking Active TSS	Brain Substantia Nigra	brain
14	chr15:74723200-74725800	Flanking Active TSS	Primary B cells from cord blood	blood
15	chr15:74723400-74725000	Flanking Active TSS	Fetal Brain Female	brain
16	chr15:74723400-74725000	Active TSS	Spleen	Spleen
17	chr15:74723400-74725000	Flanking Active TSS	HMEC	breast
18	chr15:74723400-74725200	Flanking Active TSS	NHEK	skin
19	chr15:74723400-74725400	Flanking Active TSS	Thymus	Thymus
20	chr15:74723400-74726600	Active TSS	HSMMtube	muscle
21	chr15:74723600-74725200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr15:74723600-74725400	Flanking Active TSS	Fetal Thymus	thymus
23	chr15:74723600-74726000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
24	chr15:74723600-74726200	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
25	chr15:74723800-74725000	Flanking Active TSS	NHDF-Ad	bronchial
26	chr15:74724000-74725200	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
27	chr15:74724000-74725200	Flanking Active TSS	HepG2	liver
28	chr15:74724000-74725200	Flanking Active TSS	NHLF	lung
29	chr15:74724000-74725400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
30	chr15:74724000-74725400	Flanking Active TSS	Primary B cells from peripheral blood	blood
31	chr15:74724200-74725000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr15:74724200-74725000	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr15:74724200-74725000	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
34	chr15:74724200-74725200	Active TSS	Esophagus	oesophagus
35	chr15:74724200-74725200	Flanking Active TSS	K562	blood
36	chr15:74724200-74725600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
37	chr15:74724200-74726400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr15:74724200-74726400	Active TSS	Osteobl	bone
39	chr15:74724400-74725000	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
40	chr15:74724400-74725200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
41	chr15:74724400-74725400	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
42	chr15:74724400-74725400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
43	chr15:74724400-74725400	Bivalent Enhancer	Fetal Lung	lung
44	chr15:74724400-74725600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
45	chr15:74724400-74725800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
46	chr15:74724600-74725000	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr15:74724600-74725000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
48	chr15:74724600-74725000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
49	chr15:74724600-74725000	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr15:74724600-74725000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin

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