Variant report

Variant	rs578128087
Chromosome Location	chr4:175305009-175305010
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016910	chr4:174952788-175349057	Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv537363	chr4:174952788-175349057	Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv596234	chr4:175053051-175361437	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
5	esv3352016	chr4:175304977-175322711	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175301800-175310600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:175303400-175305600	Enhancers	Fetal Intestine Large	intestine
3	chr4:175303400-175308200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr4:175304400-175305200	Enhancers	H9 Cell Line	embryonic stem cell
5	chr4:175304400-175305400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr4:175304400-175305400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr4:175304400-175305400	Enhancers	Primary hematopoietic stem cells	blood
8	chr4:175304400-175305400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr4:175304400-175305400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr4:175304400-175305400	Enhancers	K562	blood
11	chr4:175304800-175305400	Enhancers	Duodenum Mucosa	Duodenum
12	chr4:175304800-175305400	Enhancers	Fetal Intestine Small	intestine
13	chr4:175305000-175305200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr4:175305000-175305200	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr4:175305000-175305200	Enhancers	Small Intestine	intestine
16	chr4:175305000-175305400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr4:175305000-175305400	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr4:175305000-175305400	Enhancers	Placenta	Placenta
19	chr4:175305000-175305400	Enhancers	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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