The 2.0 version of rSNPBase

Variant report

Variant rs578132978
Chromosome Location chr4:54332625-54332626
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:44 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:54295600-54339400 Weak transcription Fetal Brain Male brain
2 chr4:54320000-54332800 Weak transcription Fetal Stomach stomach
3 chr4:54320000-54342000 Weak transcription Pancreas Pancrea
4 chr4:54320000-54353200 Weak transcription Gastric stomach
5 chr4:54321400-54341800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
6 chr4:54321800-54339800 Weak transcription Placenta Amnion Placenta Amnion
7 chr4:54327600-54347800 Weak transcription Fetal Muscle Trunk muscle
8 chr4:54327800-54334600 Weak transcription NHLF lung
9 chr4:54327800-54335200 Weak transcription HMEC breast
10 chr4:54327800-54341800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
11 chr4:54327800-54362200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
12 chr4:54328000-54332800 Weak transcription A549 lung
13 chr4:54328000-54339400 Weak transcription Rectal Mucosa Donor 31 rectum
14 chr4:54328200-54362000 Weak transcription Brain Inferior Temporal Lobe brain
15 chr4:54328400-54333600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
16 chr4:54328400-54362000 Weak transcription Brain Angular Gyrus brain
17 chr4:54328600-54339600 Weak transcription Fetal Brain Female brain
18 chr4:54329400-54332800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
19 chr4:54329600-54339000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
20 chr4:54329600-54341600 Weak transcription Rectal Mucosa Donor 29 rectum
21 chr4:54329600-54341800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
22 chr4:54329600-54342000 Weak transcription NH-A brain
23 chr4:54329600-54351000 Weak transcription Adipose Nuclei Adipose
24 chr4:54329600-54373600 Weak transcription Brain Germinal Matrix brain
25 chr4:54329800-54341600 Weak transcription NHDF-Ad bronchial
26 chr4:54329800-54374000 Weak transcription Left Ventricle heart
27 chr4:54330200-54332800 Weak transcription Placenta Placenta
28 chr4:54330200-54340800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
29 chr4:54330200-54341800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr4:54330400-54339200 Weak transcription Liver Liver
31 chr4:54331600-54334600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
32 chr4:54331800-54332800 ZNF genes & repeats HUES64 Cell Line embryonic stem cell
33 chr4:54332000-54333000 ZNF genes & repeats ES-UCSF4 Cell Line embryonic stem cell
34 chr4:54332000-54341800 Weak transcription Muscle Satellite Cultured Cells --
35 chr4:54332000-54342400 Weak transcription HSMM muscle
36 chr4:54332200-54333600 ZNF genes & repeats iPS-20b Cell Line embryonic stem cell
37 chr4:54332200-54333600 ZNF genes & repeats Fetal Intestine Small intestine
38 chr4:54332600-54333000 ZNF genes & repeats iPS DF 19.11 Cell Line embryonic stem cell
39 chr4:54332600-54333000 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin03 Skin
40 chr4:54332600-54333000 ZNF genes & repeats Aorta Aorta
41 chr4:54332600-54333000 ZNF genes & repeats Sigmoid Colon Sigmoid Colon
42 chr4:54332600-54333200 ZNF genes & repeats Fetal Intestine Large intestine
43 chr4:54332600-54333600 ZNF genes & repeats H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
44 chr4:54332600-54333600 ZNF genes & repeats Duodenum Mucosa Duodenum

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Last update: Aug 31, 2015