Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:28567247..28569402-chr18:28680129..28682819,2	K562	blood:

Variant related genes	Relation type
ENSG00000265888	Chromatin interaction
ENSG00000134755	Chromatin interaction

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833613	chr18:28446454-28623599	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv909515	chr18:28556767-28584556	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv3439121	chr18:28563754-28568052	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv470414	chr18:28566665-28576533	Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28566000-28567800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr18:28566200-28567800	Weak transcription	Fetal Brain Male	brain
3	chr18:28566200-28572400	Weak transcription	Esophagus	oesophagus
4	chr18:28566200-28600600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr18:28566400-28568400	Enhancers	Placenta Amnion	Placenta Amnion
6	chr18:28566800-28569400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr18:28567200-28567600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr18:28567200-28568200	Enhancers	Fetal Intestine Small	intestine
9	chr18:28567200-28568600	Flanking Active TSS	NHEK	skin
10	chr18:28567200-28568800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr18:28567200-28568800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr18:28567200-28568800	Enhancers	HMEC	breast
13	chr18:28567400-28567600	Enhancers	Fetal Intestine Large	intestine
14	chr18:28567400-28567600	Enhancers	Pancreas	Pancrea
15	chr18:28567400-28567800	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr18:28567400-28567800	Enhancers	A549	lung
17	chr18:28567400-28567800	Flanking Active TSS	Hela-S3	cervix
18	chr18:28567400-28567800	Enhancers	K562	blood
19	chr18:28567400-28568200	Enhancers	Placenta	Placenta
20	chr18:28567400-28568400	Enhancers	Stomach Mucosa	stomach
21	chr18:28567400-28568800	Enhancers	Rectal Mucosa Donor 31	rectum

Quick Search: