Variant report

Variant	rs578196091
Chromosome Location	chr8:99347552-99347553
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:99344129..99347953-chr8:99347984..99350606,4	K562	blood:
2	chr8:99347365..99349416-chr8:99356232..99359153,2	K562	blood:
3	chr8:99302112..99311881-chr8:99336694..99356691,43	MCF-7	breast:
4	chr1:234745047..234747067-chr8:99344812..99347699,2	MCF-7	breast:
5	chr8:99304023..99311791-chr8:99340525..99354206,27	MCF-7	breast:
6	chr8:99341826..99344018-chr8:99347525..99349610,2	K562	blood:
7	chr8:99181890..99183854-chr8:99347309..99350010,2	MCF-7	breast:
8	chr8:99344736..99347953-chr8:99348247..99350606,3	K562	blood:

No data

No data

No data

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv831406	chr8:99290745-99482076	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv891217	chr8:99346537-99391285	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99339200-99348000	Weak transcription	HSMMtube	muscle
2	chr8:99341000-99348200	Weak transcription	HSMM	muscle
3	chr8:99341800-99349200	Weak transcription	NHLF	lung
4	chr8:99344400-99347600	Enhancers	Osteobl	bone
5	chr8:99344400-99354200	Enhancers	NHDF-Ad	bronchial
6	chr8:99345200-99347600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr8:99345200-99348800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr8:99345200-99349600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr8:99345200-99350200	Weak transcription	Adipose Nuclei	Adipose
10	chr8:99345400-99348600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr8:99345600-99349200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr8:99347400-99348200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr8:99347400-99348600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr8:99347400-99349000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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