Variant report

Variant	rs578198383
Chromosome Location	chr11:73017818-73017819
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:73017544-73019354	A549	lung:	n/a	chr11:73018482-73018500 chr11:73018485-73018498 chr11:73018483-73018499 chr11:73018765-73018778 chr11:73018484-73018505
2	CTCF	chr11:73017740-73017890	GM12875	blood:	n/a	n/a
3	SMC3	chr11:73016942-73021131	SK-N-SH	brain:	n/a	chr11:73018484-73018498 chr11:73017587-73017594 chr11:73019010-73019017
4	CTCF	chr11:73017619-73020165	SK-N-SH	brain:	n/a	chr11:73018482-73018500 chr11:73018485-73018498 chr11:73018483-73018499 chr11:73018765-73018778 chr11:73018484-73018505 chr11:73019470-73019483
5	POLR2A	chr11:73017434-73017819	Hela-S3	cervix:	n/a	n/a
6	POLR2A	chr11:73017345-73017868	ECC-1	luminal epithelium:	n/a	n/a
7	MAZ	chr11:73017713-73021631	IMR90	lung:	n/a	chr11:73019591-73019600 chr11:73019467-73019477 chr11:73019218-73019225 chr11:73018176-73018186
8	MXI1	chr11:73017809-73020610	SK-N-SH	brain:	n/a	chr11:73019505-73019520 chr11:73018580-73018589
9	TCF12	chr11:73017790-73018722	ECC-1	luminal epithelium:	n/a	chr11:73018579-73018589
10	RCOR1	chr11:73017408-73021448	IMR90	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:73017499..73019012-chr11:73106974..73109687,2	MCF-7	breast:
2	chr11:73012187..73014199-chr11:73016875..73018746,2	K562	blood:
3	chr11:72980434..72984433-chr11:73015744..73020345,4	MCF-7	breast:
4	chr11:73016708..73020857-chr11:73085853..73088628,6	MCF-7	breast:
5	chr11:73015582..73020883-chr11:73085250..73090220,9	MCF-7	breast:
6	chr11:73000325..73002595-chr11:73016904..73019297,2	MCF-7	breast:
7	chr11:73008316..73010568-chr11:73017508..73019112,2	MCF-7	breast:
8	chr11:73017077..73020076-chr11:73086849..73089366,3	K562	blood:

Variant related genes	Relation type
ARHGEF17	TF binding region
ENSG00000171631	Chromatin interaction
ENSG00000054967	Chromatin interaction
ENSG00000256928	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832208	chr11:72876184-73091003	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
2	esv1821041	chr11:72937162-73113080	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
3	nsv520665	chr11:72999221-73061856	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv3440775	chr11:73017529-73020077	Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73000800-73018000	Weak transcription	Pancreas	Pancrea
2	chr11:73006600-73018000	Weak transcription	Right Atrium	heart
3	chr11:73016600-73018000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:73016600-73018000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:73016800-73018200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:73017000-73018000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:73017000-73018000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
8	chr11:73017000-73018000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr11:73017000-73018200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr11:73017000-73018800	Enhancers	Spleen	Spleen
11	chr11:73017200-73018000	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr11:73017200-73018000	Enhancers	Primary B cells from cord blood	blood
13	chr11:73017200-73018000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr11:73017200-73018000	Enhancers	Colon Smooth Muscle	Colon
15	chr11:73017200-73018200	Enhancers	Primary hematopoietic stem cells	blood
16	chr11:73017200-73018800	Enhancers	Placenta Amnion	Placenta Amnion
17	chr11:73017400-73018000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr11:73017400-73018000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr11:73017400-73018000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr11:73017400-73018000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
21	chr11:73017400-73018000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr11:73017400-73018000	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr11:73017400-73018000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
24	chr11:73017400-73018000	Enhancers	Fetal Intestine Large	intestine
25	chr11:73017400-73018000	Enhancers	Fetal Intestine Small	intestine
26	chr11:73017400-73018000	Enhancers	Fetal Muscle Leg	muscle
27	chr11:73017400-73018000	Enhancers	A549	lung
28	chr11:73017400-73018000	Enhancers	HMEC	breast
29	chr11:73017400-73018000	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr11:73017400-73018200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr11:73017400-73018200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr11:73017400-73018200	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr11:73017400-73018200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
34	chr11:73017400-73018200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
35	chr11:73017400-73018200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr11:73017400-73018200	Enhancers	Fetal Muscle Trunk	muscle
37	chr11:73017400-73018200	Enhancers	Placenta	Placenta
38	chr11:73017400-73018200	Enhancers	Fetal Thymus	thymus
39	chr11:73017400-73018400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
40	chr11:73017600-73018000	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
41	chr11:73017600-73018000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
42	chr11:73017600-73018000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr11:73017600-73018000	Enhancers	Primary neutrophils fromperipheralblood	blood
44	chr11:73017600-73018000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
45	chr11:73017600-73018000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
46	chr11:73017600-73018000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr11:73017600-73018000	Enhancers	Brain Hippocampus Middle	brain
48	chr11:73017600-73018000	Enhancers	Fetal Stomach	stomach
49	chr11:73017600-73018000	Enhancers	Stomach Smooth Muscle	stomach
50	chr11:73017600-73018000	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links