Variant report

Variant	rs578206171
Chromosome Location	chr4:175440516-175440517
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:175438441..175442290-chr4:175442561..175447463,6	K562	blood:

Variant related genes	Relation type
ENSG00000164120	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv525487	chr4:175400104-175470867	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv880970	chr4:175434394-175444006	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv880884	chr4:175439056-175453830	Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175396000-175442800	Weak transcription	Esophagus	oesophagus
2	chr4:175410000-175440800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr4:175420600-175441000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr4:175427400-175440600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr4:175427400-175443000	Weak transcription	Lung	lung
6	chr4:175427600-175441800	Weak transcription	Fetal Thymus	thymus
7	chr4:175429400-175441200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr4:175429400-175442600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr4:175431000-175442400	Weak transcription	Fetal Intestine Large	intestine
10	chr4:175432800-175441600	Weak transcription	Placenta	Placenta
11	chr4:175433200-175442600	Weak transcription	Fetal Intestine Small	intestine
12	chr4:175435800-175442000	Weak transcription	Rectal Smooth Muscle	rectum
13	chr4:175436800-175441400	Weak transcription	Stomach Mucosa	stomach
14	chr4:175439200-175441000	Enhancers	Primary T cells from cord blood	blood
15	chr4:175439400-175440600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr4:175439400-175441600	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr4:175439600-175441400	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr4:175439600-175441800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr4:175439600-175442600	Weak transcription	Colon Smooth Muscle	Colon
20	chr4:175439600-175442800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr4:175439800-175441800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr4:175440000-175441200	Enhancers	A549	lung
23	chr4:175440000-175441400	Weak transcription	Primary hematopoietic stem cells	blood
24	chr4:175440000-175444000	Active TSS	Liver	Liver
25	chr4:175440200-175441600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr4:175440200-175441800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr4:175440400-175441400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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