Variant report

Variant	rs578228568
Chromosome Location	chr6:44358409-44358410
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:44307682..44310665-chr6:44355077..44358723,3	K562	blood:
2	chr6:44356556..44360481-chr6:44380097..44385414,6	K562	blood:
3	chr6:44357790..44359510-chr6:44364205..44366302,2	K562	blood:
4	chr6:44356394..44359367-chr6:44380277..44384190,3	K562	blood:
5	chr6:44275712..44278535-chr6:44356876..44358602,2	K562	blood:

Variant related genes	Relation type
ENSG00000249481	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019145	chr6:44313576-44421440	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	esv3358564	chr6:44357874-44360072	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3372298	chr6:44358274-44359622	Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44356200-44359200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:44356400-44358800	Weak transcription	Lung	lung
3	chr6:44356400-44359200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:44356400-44359400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:44356400-44361800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:44356400-44364800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr6:44356400-44393800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:44356600-44358800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:44357000-44359200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr6:44357000-44359200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr6:44357000-44359200	Weak transcription	HSMMtube	muscle
12	chr6:44357200-44358600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr6:44357200-44359200	Weak transcription	NHDF-Ad	bronchial
14	chr6:44357200-44359400	Genic enhancers	Primary T helper cells fromperipheralblood	blood
15	chr6:44357200-44360400	Weak transcription	Colonic Mucosa	Colon
16	chr6:44357200-44361400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:44357200-44376200	Weak transcription	Stomach Mucosa	stomach
18	chr6:44357400-44358600	Enhancers	Primary hematopoietic stem cells	blood
19	chr6:44357400-44358600	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr6:44357400-44358800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:44357400-44359000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:44357400-44359000	Weak transcription	Ovary	ovary
23	chr6:44357400-44359000	Weak transcription	Pancreas	Pancrea
24	chr6:44357400-44359200	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr6:44357400-44359400	Weak transcription	Esophagus	oesophagus
26	chr6:44357400-44359400	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr6:44357400-44360000	Weak transcription	Primary B cells from cord blood	blood
28	chr6:44357400-44360200	Weak transcription	Brain Substantia Nigra	brain
29	chr6:44357400-44360400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr6:44357400-44361400	Weak transcription	Psoas Muscle	Psoas
31	chr6:44357400-44364400	Weak transcription	Right Atrium	heart
32	chr6:44357400-44367000	Strong transcription	HSMM	muscle
33	chr6:44357400-44367200	Strong transcription	Fetal Muscle Leg	muscle
34	chr6:44357600-44359000	Weak transcription	Gastric	stomach
35	chr6:44357600-44359000	Strong transcription	Left Ventricle	heart
36	chr6:44357600-44359000	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr6:44357600-44361400	Weak transcription	Right Ventricle	heart
38	chr6:44357600-44370200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:44357600-44377600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr6:44357600-44383200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr6:44357600-44388200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr6:44357800-44359200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr6:44357800-44359200	Weak transcription	NHEK	skin
44	chr6:44357800-44359800	Weak transcription	A549	lung
45	chr6:44357800-44361000	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr6:44357800-44367000	Strong transcription	Fetal Muscle Trunk	muscle
47	chr6:44357800-44367200	Strong transcription	Placenta	Placenta
48	chr6:44357800-44378200	Strong transcription	HUES48 Cell Line	embryonic stem cell
49	chr6:44358000-44358600	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr6:44358000-44358800	Weak transcription	Fetal Stomach	stomach

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