Variant report

Variant	rs57827034
Chromosome Location	chr1:165746636-165746637
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs55720942	0.89[AFR][1000 genomes]
rs56279347	0.88[AFR][1000 genomes]
rs59334279	0.89[AFR][1000 genomes]
rs60656801	0.88[AFR][1000 genomes]
rs73014662	0.89[AFR][1000 genomes]
rs73014663	0.89[AFR][1000 genomes]
rs73014665	0.89[AFR][1000 genomes]
rs73014669	0.89[AFR][1000 genomes]
rs73016628	0.84[AFR][1000 genomes]
rs73016629	0.84[AFR][1000 genomes]
rs73016631	0.84[AFR][1000 genomes]
rs73016633	0.84[AFR][1000 genomes]
rs73016634	0.84[AFR][1000 genomes]
rs73016640	0.84[AFR][1000 genomes]
rs73016641	0.84[AFR][1000 genomes]
rs73016648	0.88[AFR][1000 genomes]
rs73016668	0.88[AFR][1000 genomes]
rs74121499	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756102	chr1:165652342-165877342	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1011720	chr1:165669589-165802516	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165740000-165747800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr1:165742800-165752000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr1:165743200-165753200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:165743200-165756600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:165743400-165747000	Weak transcription	Brain Substantia Nigra	brain
6	chr1:165743400-165748000	Weak transcription	Adipose Nuclei	Adipose
7	chr1:165745200-165747000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links