Variant report

Variant	rs57834801
Chromosome Location	chr21:29085318-29085319
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs2831105	0.87[EUR][1000 genomes]
rs2831106	0.87[EUR][1000 genomes]
rs2831108	0.94[EUR][1000 genomes]
rs2831109	0.94[EUR][1000 genomes]
rs2831111	0.94[EUR][1000 genomes]
rs2831114	0.94[EUR][1000 genomes]
rs2831115	0.94[EUR][1000 genomes]
rs2831116	0.94[EUR][1000 genomes]
rs2831117	0.94[EUR][1000 genomes]
rs2831118	0.94[EUR][1000 genomes]
rs2831119	0.94[EUR][1000 genomes]
rs2831122	0.94[EUR][1000 genomes]
rs2831123	0.94[EUR][1000 genomes]
rs2831124	0.94[EUR][1000 genomes]
rs2831125	0.87[EUR][1000 genomes]
rs2831127	0.94[EUR][1000 genomes]
rs28372648	0.94[EUR][1000 genomes]
rs28481440	0.94[EUR][1000 genomes]
rs57891571	0.87[EUR][1000 genomes]
rs73386097	0.94[EUR][1000 genomes]
rs8133174	0.93[EUR][1000 genomes]
rs9305330	0.94[EUR][1000 genomes]
rs9980330	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459229	chr21:28543456-29482488	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv587342	chr21:28543456-29482488	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1059423	chr21:28957144-29306656	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv913670	chr21:29022265-29525767	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1059134	chr21:29061408-29188185	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:29084600-29086800	Enhancers	Colon Smooth Muscle	Colon
2	chr21:29084800-29085800	Weak transcription	Gastric	stomach
3	chr21:29084800-29085800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr21:29084800-29086800	Enhancers	Rectal Smooth Muscle	rectum
5	chr21:29085200-29086200	Enhancers	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links