Variant report

Variant	rs57839679
Chromosome Location	chr19:37081963-37081964
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs59333503	1.00[AFR][1000 genomes]
rs59938693	0.94[AFR][1000 genomes]
rs59942286	0.88[AFR][1000 genomes]
rs60030128	0.88[AFR][1000 genomes]
rs60324139	0.88[AFR][1000 genomes]
rs60794053	0.88[AFR][1000 genomes]
rs60916741	0.89[AFR][1000 genomes]
rs7251026	1.00[AFR][1000 genomes]
rs7255273	0.88[AFR][1000 genomes]
rs7258986	1.00[AFR][1000 genomes]
rs8100920	0.81[AFR][1000 genomes]
rs8112910	1.00[AFR][1000 genomes]
rs8113012	1.00[AFR][1000 genomes]
rs8113549	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv833817	chr19:36978852-37195695	ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
6	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
7	esv3434386	chr19:37073454-37114509	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37065600-37095400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:37066800-37091400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr19:37068800-37083000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr19:37070000-37095400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr19:37072600-37082000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr19:37077000-37085000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr19:37079200-37082000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr19:37079800-37095200	Weak transcription	NH-A	brain
9	chr19:37080200-37084600	Weak transcription	Brain Substantia Nigra	brain
10	chr19:37080200-37095200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr19:37080400-37082400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr19:37080400-37083200	Weak transcription	HepG2	liver
13	chr19:37080400-37095000	Weak transcription	Brain Cingulate Gyrus	brain
14	chr19:37080400-37095000	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr19:37080400-37095000	Weak transcription	Fetal Muscle Leg	muscle
16	chr19:37080600-37083200	Weak transcription	Placenta	Placenta
17	chr19:37080600-37084800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr19:37080600-37085200	Weak transcription	Brain Angular Gyrus	brain
19	chr19:37080600-37085200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr19:37080600-37085600	Weak transcription	Brain Anterior Caudate	brain
21	chr19:37080600-37094600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr19:37080600-37095200	Weak transcription	Right Ventricle	heart
23	chr19:37080600-37095200	Weak transcription	HSMMtube	muscle
24	chr19:37080800-37083800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr19:37080800-37084000	Weak transcription	Osteobl	bone
26	chr19:37080800-37084600	Weak transcription	Fetal Heart	heart
27	chr19:37080800-37088800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr19:37080800-37093800	Weak transcription	Fetal Brain Male	brain
29	chr19:37080800-37095000	Weak transcription	Brain Hippocampus Middle	brain
30	chr19:37080800-37095200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr19:37080800-37095200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr19:37080800-37095200	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr19:37081000-37083000	Weak transcription	Primary B cells from peripheral blood	blood
34	chr19:37081000-37084600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr19:37081000-37093800	Weak transcription	Dnd41	blood
36	chr19:37081200-37082600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr19:37081200-37082600	Weak transcription	Fetal Thymus	thymus
38	chr19:37081200-37082800	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr19:37081200-37084000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr19:37081200-37084800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr19:37081200-37085200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr19:37081200-37085200	Weak transcription	Fetal Muscle Trunk	muscle
43	chr19:37081200-37085800	Weak transcription	Rectal Smooth Muscle	rectum
44	chr19:37081200-37095000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr19:37081200-37095200	Weak transcription	Left Ventricle	heart
46	chr19:37081400-37084200	Weak transcription	Primary B cells from cord blood	blood

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