Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr3:132911251-132911602	H1-hESC	embryonic stem cell:	n/a	n/a
2	TEAD4	chr3:132911136-132911608	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
TMEM108	TF binding region

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10935049	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11707664	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11714776	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1450053	0.85[ASN][1000 genomes]
rs2197968	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55702045	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55809592	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55951129	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56135248	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66984248	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7630252	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7642901	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9839940	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000962	chr3:132115062-132919907	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv530055	chr3:132380878-132982343	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:132899600-132912000	Enhancers	Fetal Brain Male	brain
2	chr3:132909800-132913600	Weak transcription	Fetal Brain Female	brain
3	chr3:132910200-132912000	Enhancers	Fetal Heart	heart
4	chr3:132910400-132911600	Enhancers	H9 Cell Line	embryonic stem cell
5	chr3:132910400-132911600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr3:132910400-132912000	Enhancers	Fetal Lung	lung
7	chr3:132910600-132911800	Enhancers	Right Atrium	heart
8	chr3:132910600-132911800	Enhancers	HSMMtube	muscle
9	chr3:132910600-132912000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr3:132910800-132911600	Enhancers	Lung	lung
11	chr3:132910800-132911800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:132910800-132912000	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr3:132910800-132912200	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr3:132910800-132912400	Enhancers	NH-A	brain
15	chr3:132911000-132911600	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr3:132911000-132911800	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr3:132911000-132912000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr3:132911200-132911600	Enhancers	Spleen	Spleen
19	chr3:132911200-132912000	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr3:132911400-132911800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr3:132911400-132911800	Enhancers	Psoas Muscle	Psoas

Quick Search: