The 2.0 version of rSNPBase

Variant report

Variant rs57848393
Chromosome Location chr12:48108517-48108518
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:62 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:48100000-48109200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
2 chr12:48100000-48111200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
3 chr12:48100600-48108800 Weak transcription Fetal Muscle Trunk muscle
4 chr12:48100600-48109000 Weak transcription Aorta Aorta
5 chr12:48100600-48109000 Weak transcription Lung lung
6 chr12:48100800-48108800 Weak transcription Brain Hippocampus Middle brain
7 chr12:48100800-48108800 Weak transcription Right Ventricle heart
8 chr12:48100800-48109400 Weak transcription HSMM muscle
9 chr12:48101000-48108800 Weak transcription Brain Angular Gyrus brain
10 chr12:48101000-48108800 Weak transcription Brain Cingulate Gyrus brain
11 chr12:48101000-48108800 Weak transcription Brain Substantia Nigra brain
12 chr12:48101000-48108800 Weak transcription Fetal Lung lung
13 chr12:48101000-48108800 Weak transcription Fetal Muscle Leg muscle
14 chr12:48101000-48109000 Weak transcription Fetal Heart heart
15 chr12:48101000-48109200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
16 chr12:48101000-48109200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
17 chr12:48101200-48109200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
18 chr12:48101400-48108800 Weak transcription Brain Inferior Temporal Lobe brain
19 chr12:48101400-48108800 Weak transcription Skeletal Muscle Male skeletal muscle
20 chr12:48101400-48109600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
21 chr12:48101400-48111000 Weak transcription Colonic Mucosa Colon
22 chr12:48101400-48111200 Weak transcription Small Intestine intestine
23 chr12:48101800-48111200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
24 chr12:48102000-48109200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
25 chr12:48102200-48108800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
26 chr12:48102200-48108800 Weak transcription Spleen Spleen
27 chr12:48102200-48109000 Weak transcription Primary T cells fromperipheralblood blood
28 chr12:48102400-48108800 Weak transcription Liver Liver
29 chr12:48102800-48125000 Weak transcription Primary T regulatory cells fromperipheralblood blood
30 chr12:48103000-48109200 Weak transcription Rectal Mucosa Donor 29 rectum
31 chr12:48103000-48109400 Weak transcription Primary T cells from cord blood blood
32 chr12:48103200-48109000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
33 chr12:48103200-48109000 Weak transcription Duodenum Mucosa Duodenum
34 chr12:48103200-48111200 Weak transcription Sigmoid Colon Sigmoid Colon
35 chr12:48103400-48109000 Weak transcription Primary T helper naive cells from peripheral blood blood
36 chr12:48103400-48111000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
37 chr12:48103600-48108600 Weak transcription Adipose Nuclei Adipose
38 chr12:48103600-48109000 Strong transcription Placenta Placenta
39 chr12:48103800-48109000 Weak transcription Primary T helper cells PMA-I stimulated --
40 chr12:48103800-48109200 Weak transcription K562 blood
41 chr12:48104000-48109000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
42 chr12:48104400-48108800 Weak transcription GM12878-XiMat blood
43 chr12:48104400-48109000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
44 chr12:48104600-48109000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
45 chr12:48104600-48109000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
46 chr12:48104600-48113000 Weak transcription Primary neutrophils fromperipheralblood blood
47 chr12:48104800-48108800 Weak transcription Primary B cells from cord blood blood
48 chr12:48104800-48108800 Weak transcription Primary hematopoietic stem cells short term culture blood
49 chr12:48104800-48109400 Weak transcription Primary hematopoietic stem cells blood
50 chr12:48105200-48109000 Weak transcription Primary B cells from peripheral blood blood

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Last update: Aug 31, 2015