Variant report

Variant	rs57854292
Chromosome Location	chr7:70854537-70854538
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10236528	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2906259	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2960877	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2960880	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56723528	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70850400-70857200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr7:70850400-70860000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr7:70850600-70855400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:70850600-70857800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:70850600-70859400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr7:70850600-70860400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr7:70850800-70862200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr7:70851400-70854600	Weak transcription	Fetal Heart	heart
9	chr7:70852000-70857000	Weak transcription	Aorta	Aorta
10	chr7:70852600-70857000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:70852800-70856000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr7:70852800-70856600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr7:70853000-70854800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr7:70853000-70855600	Strong transcription	HUES48 Cell Line	embryonic stem cell
15	chr7:70853200-70854800	Strong transcription	H9 Cell Line	embryonic stem cell
16	chr7:70853400-70854800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr7:70853400-70885800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr7:70853600-70854600	Weak transcription	Ovary	ovary
19	chr7:70853800-70854800	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr7:70853800-70855200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:70854000-70855000	Strong transcription	Fetal Muscle Leg	muscle
22	chr7:70854000-70860600	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr7:70854200-70856400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr7:70854400-70855600	Weak transcription	Fetal Stomach	stomach

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