Variant report

Variant	rs57859251
Chromosome Location	chr4:75264304-75264305
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:75262686..75264430-chr4:75264821..75267774,2	MCF-7	breast:
2	chr4:75259488..75265859-chr4:75266345..75272379,9	K562	blood:
3	chr4:75263824..75266166-chr4:75394243..75397224,2	K562	blood:
4	chr4:75225362..75227147-chr4:75262787..75264830,2	K562	blood:
5	chr2:204209751..204211271-chr4:75263867..75265490,2	K562	blood:
6	chr4:75261861..75264340-chr4:75268457..75270025,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1261907	1.00[AMR][1000 genomes]
rs571068	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525980	chr4:74731526-75382209	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1009099	chr4:75089233-75726206	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:75263400-75264400	Active TSS	Primary hematopoietic stem cells short term culture	blood
2	chr4:75263400-75264400	Active TSS	Duodenum Mucosa	Duodenum
3	chr4:75263400-75264400	Active TSS	GM12878-XiMat	blood
4	chr4:75263400-75264600	Active TSS	Primary T regulatory cells fromperipheralblood	blood
5	chr4:75263400-75264600	Active TSS	Rectal Mucosa Donor 29	rectum
6	chr4:75263600-75264400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
7	chr4:75263600-75264400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
8	chr4:75263600-75264400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
9	chr4:75263600-75264400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
10	chr4:75263600-75264400	Active TSS	Adipose Nuclei	Adipose
11	chr4:75263600-75264400	Active TSS	Colon Smooth Muscle	Colon
12	chr4:75263600-75264400	Active TSS	Rectal Smooth Muscle	rectum
13	chr4:75263600-75264400	Active TSS	Skeletal Muscle Female	skeletal muscle
14	chr4:75263600-75264400	Active TSS	Thymus	Thymus
15	chr4:75263600-75264600	Active TSS	Primary T cells from cord blood	blood
16	chr4:75263600-75264600	Active TSS	Primary T cells fromperipheralblood	blood
17	chr4:75263800-75264400	Active TSS	Primary B cells from cord blood	blood
18	chr4:75263800-75264400	Active TSS	Primary T helper naive cells from peripheral blood	blood
19	chr4:75263800-75264400	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
20	chr4:75263800-75264400	Active TSS	Primary T helper cells fromperipheralblood	blood
21	chr4:75263800-75264400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr4:75263800-75264400	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
23	chr4:75263800-75264400	Active TSS	Primary T killer memory cells from peripheral blood	blood
24	chr4:75263800-75264400	Active TSS	Rectal Mucosa Donor 31	rectum
25	chr4:75263800-75264600	Active TSS	Primary monocytes fromperipheralblood	blood
26	chr4:75263800-75264600	Active TSS	Primary B cells from peripheral blood	blood
27	chr4:75263800-75264600	Active TSS	Primary hematopoietic stem cells	blood
28	chr4:75263800-75264600	Active TSS	Primary T helper naive cells fromperipheralblood	blood
29	chr4:75263800-75264600	Active TSS	Primary T helper cells PMA-I stimulated	--
30	chr4:75263800-75264600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr4:75263800-75264600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr4:75263800-75264600	Active TSS	Monocytes-CD14+_RO01746	blood
33	chr4:75264000-75264400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr4:75264000-75264400	Active TSS	Colonic Mucosa	Colon
35	chr4:75264000-75264400	Active TSS	Esophagus	oesophagus
36	chr4:75264000-75264600	Active TSS	Primary neutrophils fromperipheralblood	blood
37	chr4:75264200-75264400	Flanking Active TSS	Placenta	Placenta
38	chr4:75264200-75264400	Enhancers	Stomach Mucosa	stomach
39	chr4:75264200-75264400	Active TSS	Dnd41	blood

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