Variant report

Variant	rs57860907
Chromosome Location	chr12:121099899-121099900
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:121095512..121100910-chr12:121122531..121126551,5	MCF-7	breast:
2	chr12:121088300..121090817-chr12:121098579..121100889,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000157782	Chromatin interaction
ENSG00000110917	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12424591	0.95[ASN][1000 genomes]
rs12425951	0.95[ASN][1000 genomes]
rs12426170	0.95[ASN][1000 genomes]
rs35014778	0.95[ASN][1000 genomes]
rs3751163	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs476676	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs510900	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs547245	0.95[ASN][1000 genomes]
rs56091449	0.91[ASN][1000 genomes]
rs59902644	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs644065	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs696335	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs696336	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs696338	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71454659	0.95[ASN][1000 genomes]
rs73222802	0.95[ASN][1000 genomes]
rs73225008	0.95[ASN][1000 genomes]
rs73225010	0.95[ASN][1000 genomes]
rs73225016	0.95[ASN][1000 genomes]
rs73225017	0.95[ASN][1000 genomes]
rs73225026	0.91[ASN][1000 genomes]
rs73225027	0.91[ASN][1000 genomes]
rs73225031	0.91[ASN][1000 genomes]
rs73225032	0.91[ASN][1000 genomes]
rs8295	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521928	chr12:121041728-121761800	Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv899557	chr12:121069201-121189116	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1037070	chr12:121069938-121459047	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	nsv1045923	chr12:121082203-121146219	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	esv3357633	chr12:121097169-121101867	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121090000-121106000	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr12:121091000-121104400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr12:121091000-121107000	Weak transcription	Brain Anterior Caudate	brain
4	chr12:121091200-121106600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr12:121091200-121106800	Weak transcription	Brain Germinal Matrix	brain
6	chr12:121093000-121107200	Weak transcription	Right Atrium	heart
7	chr12:121093200-121107000	Weak transcription	Colon Smooth Muscle	Colon
8	chr12:121093200-121107200	Weak transcription	Fetal Lung	lung
9	chr12:121095600-121104400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr12:121096200-121105800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr12:121096600-121100400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr12:121097000-121100200	Strong transcription	Brain Inferior Temporal Lobe	brain
13	chr12:121097200-121107000	Weak transcription	Adipose Nuclei	Adipose
14	chr12:121097600-121100600	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr12:121097600-121107000	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr12:121097800-121106800	Weak transcription	Fetal Brain Female	brain
17	chr12:121098000-121100000	Strong transcription	Brain Angular Gyrus	brain
18	chr12:121099200-121104000	Weak transcription	Fetal Stomach	stomach
19	chr12:121099200-121107000	Weak transcription	Left Ventricle	heart
20	chr12:121099800-121100000	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
21	chr12:121099800-121101800	Enhancers	GM12878-XiMat	blood
22	chr12:121099800-121104400	Weak transcription	Fetal Muscle Leg	muscle

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