Variant report
| Variant | rs57862787 |
|---|---|
| Chromosome Location | chr6:145816675-145816676 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| Variant related genes | Relation type |
|---|---|
| ENSG00000217612 | TF binding region |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs12524636 | 0.86[AMR][1000 genomes] |
| rs12526956 | 0.91[ASN][1000 genomes] |
| rs1605805 | 0.96[ASN][1000 genomes] |
| rs17075195 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs17724599 | 0.96[ASN][1000 genomes] |
| rs17724783 | 0.88[ASN][1000 genomes] |
| rs17797750 | 0.88[ASN][1000 genomes] |
| rs17797792 | 0.88[ASN][1000 genomes] |
| rs6921536 | 0.91[ASN][1000 genomes] |
| rs7739054 | 0.88[ASN][1000 genomes] |
| rs7760972 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs9484998 | 0.96[ASN][1000 genomes] |
| rs9485002 | 0.87[ASN][1000 genomes] |
| rs9485003 | 0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv604838 | chr6:145709371-145841146 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | esv2763962 | chr6:145802158-145817051 | Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| 3 | nsv886746 | chr6:145815949-145920894 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv886747 | chr6:145815949-145922777 | Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
