Variant report

Variant	rs57870061
Chromosome Location	chr8:116124165-116124166
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:116122466..116125390-chr8:116126954..116128703,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs28699279	1.00[AMR][1000 genomes]
rs57187120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59098752	0.85[AFR][1000 genomes]
rs60896108	0.85[AFR][1000 genomes]
rs73366349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73370742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73370746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73370751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73370752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73370756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73370759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73370763	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73370767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73370769	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73370773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73370788	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73370796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73703159	1.00[AMR][1000 genomes]
rs73703168	1.00[AMR][1000 genomes]
rs73703180	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv611976	chr8:115261134-116223865	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1018280	chr8:115307838-116189192	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv539726	chr8:115307838-116189192	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv891373	chr8:115351857-116295809	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv891395	chr8:115642536-116222842	Enhancers Flanking Active TSS Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv891397	chr8:115810385-116129344	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv891399	chr8:116037798-116295809	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1025666	chr8:116051254-116149507	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1025482	chr8:116051374-116149507	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv1029474	chr8:116054292-116148965	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv1032185	chr8:116054292-116149507	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv1016140	chr8:116054292-116154006	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:116123000-116124400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:116123800-116124800	Enhancers	Brain Germinal Matrix	brain

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