Variant report

Variant	rs57875268
Chromosome Location	chr6:144493675-144493676
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:144479875..144482204-chr6:144493372..144495029,2	K562	blood:
2	chr6:144492987..144496761-chr6:144536161..144539175,3	K562	blood:
3	chr6:144474360..144477861-chr6:144491638..144494862,3	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs55752736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56155818	1.00[AMR][1000 genomes]
rs57451512	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58728276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73585213	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73585220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778600	1.00[AMR][1000 genomes]
rs73780517	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024333	chr6:144468065-144502824	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144473400-144513800	Weak transcription	Primary T cells from cord blood	blood
2	chr6:144473600-144507800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:144474200-144499400	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr6:144475000-144500600	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr6:144476800-144500600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:144479000-144500600	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr6:144479000-144511800	Weak transcription	Psoas Muscle	Psoas
8	chr6:144480200-144508200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr6:144481000-144507800	Weak transcription	Left Ventricle	heart
10	chr6:144481200-144496800	Weak transcription	Fetal Muscle Leg	muscle
11	chr6:144481200-144507800	Weak transcription	Right Ventricle	heart
12	chr6:144484800-144500600	Weak transcription	Primary B cells from peripheral blood	blood
13	chr6:144485200-144500600	Weak transcription	Primary B cells from cord blood	blood
14	chr6:144487000-144507800	Weak transcription	Esophagus	oesophagus
15	chr6:144488800-144495400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:144488800-144510000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr6:144489400-144508200	Weak transcription	Liver	Liver
18	chr6:144490000-144494000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr6:144490400-144503400	Weak transcription	Spleen	Spleen
20	chr6:144491400-144497400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr6:144491600-144494200	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr6:144491800-144494000	Strong transcription	Primary neutrophils fromperipheralblood	blood
23	chr6:144492200-144494000	Strong transcription	Adipose Nuclei	Adipose
24	chr6:144492400-144497000	Weak transcription	K562	blood
25	chr6:144493200-144495000	ZNF genes & repeats	GM12878-XiMat	blood
26	chr6:144493400-144493800	ZNF genes & repeats	Aorta	Aorta
27	chr6:144493400-144498200	Genic enhancers	Monocytes-CD14+_RO01746	blood
28	chr6:144493600-144493800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
29	chr6:144493600-144493800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr6:144493600-144493800	Strong transcription	Lung	lung
31	chr6:144493600-144494000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr6:144493600-144495000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr6:144493600-144497400	Weak transcription	Fetal Heart	heart
34	chr6:144493600-144500800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr6:144493600-144507600	Weak transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links