Variant report

Variant	rs57878889
Chromosome Location	chr16:52344224-52344225
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs60064667	1.00[AFR][1000 genomes]
rs60605891	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492248	chr16:51681902-52456082	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv1066719	chr16:52294981-53141905	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv827651	chr16:52304029-52373509	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:52341600-52344400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr16:52341600-52345000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr16:52341600-52348000	Weak transcription	Fetal Lung	lung
4	chr16:52342000-52344600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr16:52342000-52344800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr16:52342400-52344400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr16:52342400-52344600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr16:52342400-52349800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr16:52342600-52344600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr16:52342800-52344400	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr16:52343000-52344600	Enhancers	Brain Germinal Matrix	brain
12	chr16:52343000-52345000	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr16:52343200-52344600	Enhancers	H9 Cell Line	embryonic stem cell
14	chr16:52343200-52344600	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr16:52343400-52344600	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr16:52343800-52344400	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr16:52343800-52344600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr16:52344000-52344600	Enhancers	H1 Cell Line	embryonic stem cell
19	chr16:52344000-52344600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr16:52344200-52344400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr16:52344200-52344800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
22	chr16:52344200-52345600	Weak transcription	Fetal Brain Male	brain
23	chr16:52344200-52351800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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