Variant report

Variant	rs57880354
Chromosome Location	chr7:79874249-79874250
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73380531	0.86[AFR][1000 genomes]
rs73380538	1.00[AFR][1000 genomes]
rs73380547	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1024312	chr7:79832637-80004812	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1029180	chr7:79832637-80017560	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79870600-79879200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr7:79872600-79874800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:79872600-79875400	Enhancers	Adipose Nuclei	Adipose
4	chr7:79872800-79874400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr7:79872800-79874800	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr7:79873600-79874400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr7:79873600-79874600	Enhancers	Brain Substantia Nigra	brain
8	chr7:79873600-79874800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr7:79873600-79874800	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr7:79873800-79874400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr7:79873800-79874400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr7:79873800-79874400	Enhancers	Osteobl	bone
13	chr7:79874000-79874400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr7:79874000-79874400	Enhancers	Psoas Muscle	Psoas
15	chr7:79874000-79874600	Enhancers	Brain Anterior Caudate	brain
16	chr7:79874000-79874600	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr7:79874000-79874800	Enhancers	Brain Angular Gyrus	brain
18	chr7:79874000-79874800	Enhancers	Fetal Muscle Leg	muscle
19	chr7:79874000-79875000	Enhancers	Fetal Stomach	stomach
20	chr7:79874000-79876400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr7:79874000-79878400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr7:79874200-79874400	Flanking Active TSS	Brain Hippocampus Middle	brain
23	chr7:79874200-79874600	Enhancers	Right Ventricle	heart
24	chr7:79874200-79874600	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr7:79874200-79874800	Enhancers	Brain Cingulate Gyrus	brain
26	chr7:79874200-79874800	Enhancers	Left Ventricle	heart
27	chr7:79874200-79874800	Enhancers	Right Atrium	heart

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