Variant report

Variant	rs57886651
Chromosome Location	chr5:41811293-41811294
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs57365158	1.00[AMR][1000 genomes]
rs57472589	1.00[AMR][1000 genomes]
rs60270388	1.00[AMR][1000 genomes]
rs715469	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830271	chr5:41716527-41895710	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv2762518	chr5:41780210-41935113	Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	108 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41756200-41813800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr5:41778200-41838200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:41790400-41814000	Weak transcription	Psoas Muscle	Psoas
4	chr5:41795400-41813000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr5:41795400-41816200	Weak transcription	Colon Smooth Muscle	Colon
6	chr5:41795400-41835800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr5:41795800-41813000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr5:41796600-41825800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr5:41796600-41830400	Weak transcription	NH-A	brain
10	chr5:41796600-41830600	Weak transcription	NHDF-Ad	bronchial
11	chr5:41796600-41830800	Weak transcription	NHLF	lung
12	chr5:41796800-41812800	Weak transcription	Fetal Brain Female	brain
13	chr5:41797000-41815200	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr5:41797200-41815200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr5:41800800-41838600	Weak transcription	Fetal Stomach	stomach
16	chr5:41801000-41815800	Weak transcription	Esophagus	oesophagus
17	chr5:41801000-41818000	Weak transcription	Fetal Intestine Large	intestine
18	chr5:41801000-41835800	Weak transcription	Stomach Smooth Muscle	stomach
19	chr5:41801000-41849200	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr5:41801200-41811400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr5:41801200-41815800	Weak transcription	Osteobl	bone
22	chr5:41801200-41816000	Weak transcription	HSMMtube	muscle
23	chr5:41801200-41817800	Weak transcription	Small Intestine	intestine
24	chr5:41801200-41849200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr5:41801200-41849200	Weak transcription	Fetal Brain Male	brain
26	chr5:41801400-41815600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr5:41801800-41815400	Weak transcription	HSMM	muscle
28	chr5:41804800-41831400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr5:41805400-41812800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr5:41806800-41816600	Weak transcription	Aorta	Aorta
31	chr5:41807000-41813800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr5:41807400-41813200	Weak transcription	K562	blood
33	chr5:41807400-41813200	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr5:41807400-41815400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr5:41807400-41818000	Weak transcription	Primary B cells from cord blood	blood
36	chr5:41807400-41822200	Weak transcription	Left Ventricle	heart
37	chr5:41807400-41826800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr5:41807400-41827400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr5:41807400-41831200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr5:41807400-41831600	Weak transcription	Thymus	Thymus
41	chr5:41807400-41832000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr5:41807600-41822600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr5:41807600-41827200	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr5:41807600-41832000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr5:41807800-41815400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr5:41808000-41830400	Weak transcription	Primary B cells from peripheral blood	blood
47	chr5:41808000-41830400	Weak transcription	HMEC	breast
48	chr5:41808600-41813800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr5:41808600-41816200	Weak transcription	Primary hematopoietic stem cells	blood
50	chr5:41808800-41815400	Weak transcription	NHEK	skin

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