Variant report

Variant	rs57897500
Chromosome Location	chr2:173393889-173393890
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16860458	1.00[EUR][1000 genomes]
rs16860523	1.00[EUR][1000 genomes]
rs16860538	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16860642	1.00[EUR][1000 genomes]
rs55725007	1.00[EUR][1000 genomes]
rs57421082	1.00[EUR][1000 genomes]
rs58293015	1.00[EUR][1000 genomes]
rs59165764	1.00[EUR][1000 genomes]
rs61737182	1.00[EUR][1000 genomes]
rs73034637	1.00[EUR][1000 genomes]
rs73034655	1.00[EUR][1000 genomes]
rs73046924	1.00[EUR][1000 genomes]
rs73980435	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173376400-173397400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:173387400-173395000	Weak transcription	Primary T cells from cord blood	blood
3	chr2:173392000-173395000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr2:173392000-173398200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr2:173392000-173400000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr2:173392600-173419600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr2:173393600-173398600	Weak transcription	Primary T helper cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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