Variant report

Variant	rs57897527
Chromosome Location	chr8:90748594-90748595
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11986477	1.00[EUR][1000 genomes]
rs11987361	1.00[EUR][1000 genomes]
rs11997127	1.00[EUR][1000 genomes]
rs160421	1.00[EUR][1000 genomes]
rs160425	1.00[EUR][1000 genomes]
rs160426	1.00[EUR][1000 genomes]
rs160428	1.00[EUR][1000 genomes]
rs160431	0.89[EUR][1000 genomes]
rs160432	0.86[EUR][1000 genomes]
rs160433	1.00[EUR][1000 genomes]
rs160434	1.00[EUR][1000 genomes]
rs160436	1.00[EUR][1000 genomes]
rs160442	1.00[EUR][1000 genomes]
rs160443	1.00[EUR][1000 genomes]
rs160452	1.00[EUR][1000 genomes]
rs160454	1.00[EUR][1000 genomes]
rs160455	0.89[EUR][1000 genomes]
rs16900019	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs184309	1.00[EUR][1000 genomes]
rs186341	0.89[EUR][1000 genomes]
rs216991	0.95[EUR][1000 genomes]
rs2338843	1.00[EUR][1000 genomes]
rs410394	1.00[EUR][1000 genomes]
rs58916408	1.00[EUR][1000 genomes]
rs60246734	1.00[EUR][1000 genomes]
rs61447097	0.89[EUR][1000 genomes]
rs61458082	1.00[EUR][1000 genomes]
rs73289972	1.00[EUR][1000 genomes]
rs73289974	1.00[EUR][1000 genomes]
rs73291834	1.00[EUR][1000 genomes]
rs73291835	1.00[EUR][1000 genomes]
rs73291867	1.00[EUR][1000 genomes]
rs73304818	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7840849	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831389	chr8:90575517-90753120	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv1031578	chr8:90670102-90757821	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv891180	chr8:90697810-90802491	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
4	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
5	nsv6294	chr8:90705780-90750101	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv934114	chr8:90720182-90999106	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
7	nsv891181	chr8:90737258-90819998	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90713600-90756200	Weak transcription	Pancreas	Pancrea
2	chr8:90738600-90749000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:90738600-90749200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr8:90739000-90749400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr8:90739200-90748800	Weak transcription	A549	lung
6	chr8:90741400-90751400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr8:90741600-90749000	Weak transcription	Gastric	stomach
8	chr8:90741600-90768200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr8:90742600-90749200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:90742600-90749200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr8:90742600-90767600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr8:90742800-90749000	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr8:90742800-90749200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr8:90742800-90762200	Weak transcription	Aorta	Aorta
15	chr8:90743000-90749400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr8:90743200-90749200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr8:90745000-90754600	Weak transcription	Colon Smooth Muscle	Colon
18	chr8:90746200-90767800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr8:90748000-90748600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr8:90748000-90748600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
21	chr8:90748000-90749600	Enhancers	Stomach Mucosa	stomach
22	chr8:90748200-90749000	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr8:90748200-90749000	Enhancers	K562	blood
24	chr8:90748400-90748800	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr8:90748400-90749200	Weak transcription	Left Ventricle	heart
26	chr8:90748400-90750000	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr8:90748400-90758200	Weak transcription	Ovary	ovary

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