Variant report

Variant	rs57900172
Chromosome Location	chr6:37469784-37469785
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr6:37469751-37470018	K562	blood:	n/a	n/a
2	CEBPB	chr6:37469435-37469790	HepG2	liver:	n/a	n/a
3	GATA2	chr6:37469677-37470182	SH-SY5Y	brain:	n/a	n/a
4	GATA3	chr6:37469576-37470138	SH-SY5Y	brain:	n/a	n/a
5	GATA3	chr6:37469737-37470065	T-47D	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37468899..37470600-chr6:37474825..37476362,2	K562	blood:

Variant related genes	Relation type
CCDC167	TF binding region
ENSG00000204110	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16889861	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs195380	1.00[EUR][1000 genomes]
rs195381	1.00[EUR][1000 genomes]
rs4345392	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37468000-37470200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr6:37468000-37470200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:37468000-37470400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:37468000-37471200	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr6:37468000-37472200	Weak transcription	Fetal Kidney	kidney
6	chr6:37468000-37472800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:37468000-37472800	Enhancers	Fetal Brain Male	brain
8	chr6:37468000-37473600	Enhancers	Primary B cells from peripheral blood	blood
9	chr6:37468000-37475800	Enhancers	Thymus	Thymus
10	chr6:37468000-37477200	Enhancers	Primary T cells fromperipheralblood	blood
11	chr6:37468000-37483600	Enhancers	Fetal Thymus	thymus
12	chr6:37468200-37469800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr6:37468200-37469800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr6:37468200-37469800	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr6:37468200-37469800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr6:37468200-37470000	Enhancers	Primary T cells from cord blood	blood
17	chr6:37468200-37470000	Weak transcription	Duodenum Mucosa	Duodenum
18	chr6:37468200-37470200	Weak transcription	HSMMtube	muscle
19	chr6:37468200-37470400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr6:37468200-37470400	Weak transcription	Fetal Brain Female	brain
21	chr6:37468200-37470800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr6:37468200-37470800	Weak transcription	Colonic Mucosa	Colon
23	chr6:37468200-37470800	Weak transcription	Fetal Muscle Trunk	muscle
24	chr6:37468200-37470800	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr6:37468200-37470800	Weak transcription	Spleen	Spleen
26	chr6:37468200-37471000	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr6:37468200-37471200	Weak transcription	Brain Germinal Matrix	brain
28	chr6:37468200-37471200	Enhancers	Dnd41	blood
29	chr6:37468200-37474200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr6:37468200-37476000	Enhancers	Primary T helper cells fromperipheralblood	blood
31	chr6:37468400-37469800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr6:37468400-37469800	Weak transcription	K562	blood
33	chr6:37468400-37470400	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr6:37468400-37475000	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr6:37468600-37473200	Enhancers	Primary hematopoietic stem cells	blood
36	chr6:37468800-37473600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr6:37469200-37473000	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr6:37469400-37470000	Enhancers	HepG2	liver
39	chr6:37469400-37470600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
40	chr6:37469400-37471000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
41	chr6:37469400-37473200	Enhancers	Primary B cells from cord blood	blood
42	chr6:37469600-37470000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
43	chr6:37469600-37470000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr6:37469600-37470400	Enhancers	GM12878-XiMat	blood
45	chr6:37469600-37472000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
46	chr6:37469600-37472200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood

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