Variant report

Variant	rs57901528
Chromosome Location	chr1:225018775-225018776
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1586037	0.81[AFR][1000 genomes]
rs1892120	0.81[AFR][1000 genomes]
rs1936636	0.90[AFR][1000 genomes]
rs57305181	0.81[AFR][1000 genomes]
rs59970070	0.81[AFR][1000 genomes]
rs6669427	0.81[AFR][1000 genomes]
rs6689472	0.81[AFR][1000 genomes]
rs6695634	0.81[AFR][1000 genomes]
rs7521285	1.00[AFR][1000 genomes]
rs7528282	0.81[AFR][1000 genomes]
rs7539846	0.81[AFR][1000 genomes]
rs7539853	0.81[AFR][1000 genomes]
rs7544638	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524125	chr1:224902054-225021860	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225017400-225019800	Enhancers	Ovary	ovary
2	chr1:225017600-225020600	Enhancers	Fetal Brain Male	brain
3	chr1:225018400-225019200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:225018400-225019800	Enhancers	Adipose Nuclei	Adipose
5	chr1:225018600-225025800	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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