Variant report

Variant	rs57917359
Chromosome Location	chr22:29607335-29607336
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr22:29607229-29607692	HEK293-T-REx	kidney:	n/a	n/a
2	NFATC1	chr22:29607294-29607803	GM12878	blood:	n/a	n/a
3	STAT5A	chr22:29607170-29607846	GM12878	blood:	n/a	chr22:29607771-29607779
4	SUZ12	chr22:29607089-29607716	H1-hESC	embryonic stem cell:	n/a	n/a
5	POLR2A	chr22:29606806-29607883	GM12892	blood:	n/a	n/a
6	POLR2A	chr22:29606828-29607731	GM12878	blood:	n/a	n/a
7	WRNIP1	chr22:29607163-29607649	GM12878	blood:	n/a	n/a
8	NR2C2	chr22:29606906-29607719	GM12878	blood:	n/a	n/a
9	POLR2A	chr22:29606693-29607824	GM12878	blood:	n/a	n/a
10	NFATC1	chr22:29607318-29607745	GM12878	blood:	n/a	n/a
11	STAT5A	chr22:29607119-29607794	GM12878	blood:	n/a	chr22:29607771-29607779
12	POLR2A	chr22:29607329-29607443	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr22:29601902..29603639-chr22:29605724..29608269,2	K562	blood:
2	chr22:29605515..29607665-chr22:29648338..29651149,2	K562	blood:
3	chr22:29601072..29604199-chr22:29606005..29610482,4	MCF-7	breast:

Variant related genes	Relation type
EMID1	TF binding region
ENSG00000186998	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs59813176	0.95[AFR][1000 genomes]
rs60846306	0.80[AFR][1000 genomes]
rs73882494	0.82[AFR][1000 genomes]
rs73882497	0.82[AFR][1000 genomes]
rs73882498	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531586	chr22:29252132-29902266	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv524483	chr22:29525126-29630337	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv914958	chr22:29586058-29620599	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv1809952	chr22:29595349-29661434	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	esv1806500	chr22:29604787-29635071	Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29602800-29611000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr22:29602800-29616000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr22:29602800-29616000	Weak transcription	Ovary	ovary
4	chr22:29603000-29610800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr22:29603400-29608800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr22:29603400-29611000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr22:29603800-29612600	Weak transcription	Brain Angular Gyrus	brain
8	chr22:29604000-29616200	Weak transcription	Thymus	Thymus
9	chr22:29604600-29608400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr22:29604800-29612600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr22:29605000-29619400	Weak transcription	Colonic Mucosa	Colon
12	chr22:29605400-29607800	Genic enhancers	Spleen	Spleen
13	chr22:29605400-29612200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr22:29605400-29612600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr22:29605400-29614400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr22:29605400-29616000	Weak transcription	Lung	lung
17	chr22:29605800-29607600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr22:29605800-29609000	Strong transcription	Fetal Stomach	stomach
19	chr22:29605800-29611200	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr22:29605800-29611400	Weak transcription	Brain Germinal Matrix	brain
21	chr22:29605800-29612400	Weak transcription	Brain Anterior Caudate	brain
22	chr22:29605800-29612800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr22:29606000-29607600	Genic enhancers	Fetal Intestine Small	intestine
24	chr22:29606000-29609000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr22:29606000-29611800	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr22:29606000-29612600	Weak transcription	Brain Hippocampus Middle	brain
27	chr22:29606200-29608400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr22:29606200-29610200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr22:29606200-29611000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr22:29606200-29611800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr22:29606200-29616000	Strong transcription	Fetal Intestine Large	intestine
32	chr22:29606600-29607400	Flanking Active TSS	Fetal Brain Female	brain
33	chr22:29606600-29607800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr22:29606800-29607400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr22:29606800-29607400	Transcr. at gene 5' and 3'	Dnd41	blood
36	chr22:29606800-29607600	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr22:29606800-29607600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr22:29606800-29607600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr22:29606800-29607600	Transcr. at gene 5' and 3'	Fetal Kidney	kidney
40	chr22:29606800-29607800	Strong transcription	Primary hematopoietic stem cells	blood
41	chr22:29606800-29607800	Genic enhancers	Fetal Lung	lung
42	chr22:29606800-29607800	Genic enhancers	Pancreas	Pancrea
43	chr22:29607000-29607600	Flanking Active TSS	GM12878-XiMat	blood
44	chr22:29607000-29607800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr22:29607200-29607600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr22:29607200-29607600	Flanking Active TSS	Fetal Brain Male	brain
47	chr22:29607200-29607600	Enhancers	Fetal Heart	heart
48	chr22:29607200-29607600	Genic enhancers	Gastric	stomach
49	chr22:29607200-29607800	Genic enhancers	Duodenum Mucosa	Duodenum
50	chr22:29607200-29612600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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