Variant report

Variant	rs57935475
Chromosome Location	chr4:55528602-55528603
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:55522620..55525465-chr4:55527232..55529578,3	K562	blood:

Variant related genes	Relation type
ENSG00000157404	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17084597	0.87[AFR][1000 genomes]
rs17084656	0.86[AFR][1000 genomes]
rs57570480	0.82[AFR][1000 genomes]
rs57604507	0.93[AFR][1000 genomes]
rs60539940	0.86[AFR][1000 genomes]
rs60603469	0.87[AFR][1000 genomes]
rs61578246	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008793	chr4:55060925-55535807	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv537098	chr4:55060925-55535807	Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv999400	chr4:55143598-55776995	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv997430	chr4:55253397-55529288	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3367952	chr4:55437113-55724644	Bivalent/Poised TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55525800-55529200	Weak transcription	Aorta	Aorta
2	chr4:55525800-55537200	Weak transcription	Right Atrium	heart
3	chr4:55526600-55531600	Weak transcription	Gastric	stomach
4	chr4:55527400-55529600	Enhancers	Primary hematopoietic stem cells	blood
5	chr4:55527600-55529400	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr4:55527800-55530000	Enhancers	NHDF-Ad	bronchial
7	chr4:55527800-55532200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr4:55528000-55529000	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr4:55528200-55529000	Enhancers	Fetal Muscle Trunk	muscle
10	chr4:55528200-55529200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:55528200-55529400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr4:55528200-55529800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr4:55528400-55528800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr4:55528400-55530200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr4:55528600-55529000	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr4:55528600-55529400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr4:55528600-55529400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr4:55528600-55529800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr4:55528600-55529800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr4:55528600-55529800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr4:55528600-55529800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr4:55528600-55533400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr4:55528600-55534000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr4:55528600-55535400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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