Variant report

Variant	rs57943070
Chromosome Location	chr4:8158046-8158047
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:8125674..8128386-chr4:8156706..8158737,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11937992	0.81[EUR][1000 genomes]
rs7697501	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34140	chr4:7787936-8172491	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv469779	chr4:7965253-8177646	Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	nsv482448	chr4:7965253-8177646	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv878591	chr4:8063501-8207083	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1010809	chr4:8097627-8292324	Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv878592	chr4:8105399-8163560	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1002794	chr4:8110083-8490934	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
8	nsv878593	chr4:8125788-8233341	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv461216	chr4:8154534-8276411	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
10	nsv593626	chr4:8154534-8276411	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
11	nsv878594	chr4:8154534-8286916	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
12	nsv878595	chr4:8154534-8390646	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:8146800-8158200	Weak transcription	Brain Angular Gyrus	brain
2	chr4:8146800-8159200	Weak transcription	Lung	lung
3	chr4:8147000-8158200	Weak transcription	Aorta	Aorta
4	chr4:8154200-8159000	Weak transcription	Esophagus	oesophagus
5	chr4:8154600-8159000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr4:8154800-8158400	Weak transcription	Brain Hippocampus Middle	brain
7	chr4:8154800-8159200	Weak transcription	Right Atrium	heart
8	chr4:8155200-8158200	Weak transcription	Pancreas	Pancrea
9	chr4:8155200-8159000	Weak transcription	Brain Anterior Caudate	brain
10	chr4:8155400-8158200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr4:8155400-8159200	Weak transcription	Right Ventricle	heart
12	chr4:8156400-8159200	Enhancers	Spleen	Spleen
13	chr4:8156600-8158400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr4:8157000-8158200	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr4:8157000-8159200	Enhancers	HSMM	muscle
16	chr4:8157600-8160400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
17	chr4:8158000-8158200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
18	chr4:8158000-8158400	Enhancers	Brain Cingulate Gyrus	brain
19	chr4:8158000-8158400	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr4:8158000-8158400	Bivalent Enhancer	Fetal Brain Female	brain
21	chr4:8158000-8158400	Enhancers	Psoas Muscle	Psoas
22	chr4:8158000-8158600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr4:8158000-8158600	Enhancers	HSMMtube	muscle
24	chr4:8158000-8159400	Bivalent Enhancer	Fetal Muscle Leg	muscle
25	chr4:8158000-8159400	Enhancers	Left Ventricle	heart
26	chr4:8158000-8159600	Enhancers	Gastric	stomach

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