Variant report

Variant	rs57943861
Chromosome Location	chr3:113278136-113278137
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:113276000..113278801-chr3:113288108..113290527,2	MCF-7	breast:
2	chr3:113277696..113281833-chr3:113284531..113288441,5	MCF-7	breast:
3	chr3:113219180..113221575-chr3:113276226..113279044,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs57067991	1.00[AMR][1000 genomes]
rs59710291	1.00[AMR][1000 genomes]
rs59767391	1.00[AMR][1000 genomes]
rs73854363	1.00[AMR][1000 genomes]
rs73854365	1.00[AMR][1000 genomes]
rs73854513	1.00[AMR][1000 genomes]
rs73854515	1.00[AMR][1000 genomes]
rs73854519	1.00[AMR][1000 genomes]
rs73854520	1.00[AMR][1000 genomes]
rs73855950	1.00[AMR][1000 genomes]
rs73855955	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013506	chr3:112890608-113680951	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv1004000	chr3:113116778-113513899	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv877349	chr3:113208224-113323787	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv877350	chr3:113208224-113332235	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113255400-113278800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr3:113255600-113278400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr3:113256000-113279000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr3:113257200-113283400	Weak transcription	Primary B cells from cord blood	blood
5	chr3:113262600-113278800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr3:113267400-113278400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr3:113268200-113279400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr3:113274000-113278200	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr3:113274400-113278800	Weak transcription	Primary T cells from cord blood	blood
10	chr3:113276200-113278400	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr3:113276200-113281400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr3:113276400-113281000	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr3:113276600-113279000	Weak transcription	Spleen	Spleen
14	chr3:113276800-113279200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr3:113276800-113279600	Weak transcription	HUVEC	blood vessel
16	chr3:113276800-113280800	Weak transcription	Gastric	stomach
17	chr3:113276800-113284800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr3:113276800-113294200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr3:113277000-113278600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr3:113277000-113278600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr3:113277000-113278800	Weak transcription	Primary B cells from peripheral blood	blood
22	chr3:113277000-113279000	Weak transcription	HMEC	breast
23	chr3:113277000-113279800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr3:113277000-113280400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr3:113277000-113280800	Weak transcription	NHEK	skin
26	chr3:113277400-113281200	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr3:113277600-113278600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr3:113277600-113279000	Enhancers	A549	lung
29	chr3:113277600-113279000	Weak transcription	HepG2	liver
30	chr3:113277600-113279800	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr3:113277600-113283200	Weak transcription	GM12878-XiMat	blood
32	chr3:113277600-113285600	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr3:113277800-113279200	Weak transcription	Fetal Thymus	thymus
34	chr3:113278000-113280400	Enhancers	Primary T helper cells fromperipheralblood	blood
35	chr3:113278000-113281600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links