Variant report

Variant	rs57944836
Chromosome Location	chr17:19672409-19672410
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs205113	0.80[AFR][1000 genomes]
rs59263276	0.85[AFR][1000 genomes]
rs7213313	0.80[AFR][1000 genomes]
rs73295824	0.85[AFR][1000 genomes]
rs73295842	0.85[AFR][1000 genomes]
rs73312778	0.85[AFR][1000 genomes]
rs73312783	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062853	chr17:19547912-20206601	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv1063892	chr17:19564634-19808485	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv907866	chr17:19582533-19697976	Weak transcription Genic enhancers Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv907867	chr17:19603060-19697976	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1061489	chr17:19654704-19705026	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:19657400-19673000	Weak transcription	HUVEC	blood vessel
2	chr17:19657400-19674000	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr17:19660400-19673800	Weak transcription	Fetal Intestine Small	intestine
4	chr17:19664200-19674000	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr17:19665800-19673800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr17:19666000-19676400	Weak transcription	Fetal Intestine Large	intestine
7	chr17:19666000-19676800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr17:19666000-19676800	Weak transcription	Fetal Lung	lung
9	chr17:19666000-19677000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr17:19666000-19678200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr17:19666000-19678600	Weak transcription	Left Ventricle	heart
12	chr17:19666000-19678800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr17:19666000-19679200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr17:19666000-19691200	Weak transcription	Spleen	Spleen
15	chr17:19666000-19691800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr17:19666200-19673400	Weak transcription	Fetal Brain Female	brain
17	chr17:19666200-19673600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr17:19666200-19676800	Weak transcription	Gastric	stomach
19	chr17:19666400-19672800	Weak transcription	Brain Germinal Matrix	brain
20	chr17:19666400-19673800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr17:19666400-19675200	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr17:19669600-19674600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr17:19669600-19675000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr17:19669600-19675000	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr17:19669600-19677800	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr17:19670000-19673600	Weak transcription	Fetal Stomach	stomach
27	chr17:19670000-19675000	Enhancers	Primary T helper cells fromperipheralblood	blood
28	chr17:19670200-19672800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr17:19670200-19673000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr17:19670200-19673000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr17:19670200-19673000	Weak transcription	HSMM	muscle
32	chr17:19670200-19673600	Weak transcription	Brain Anterior Caudate	brain
33	chr17:19670200-19673800	Weak transcription	Brain Cingulate Gyrus	brain
34	chr17:19670200-19673800	Weak transcription	Lung	lung
35	chr17:19670200-19673800	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr17:19670200-19674600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr17:19670200-19674800	Weak transcription	Brain Substantia Nigra	brain
38	chr17:19670200-19674800	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr17:19670200-19675200	Weak transcription	Right Atrium	heart
40	chr17:19670200-19677000	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr17:19670200-19678400	Weak transcription	Duodenum Mucosa	Duodenum
42	chr17:19670200-19679200	Weak transcription	Rectal Smooth Muscle	rectum
43	chr17:19670200-19679400	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr17:19670200-19694200	Weak transcription	Right Ventricle	heart
45	chr17:19670200-19699400	Weak transcription	Psoas Muscle	Psoas
46	chr17:19670400-19672800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr17:19670400-19673000	Weak transcription	A549	lung
48	chr17:19670400-19673400	Weak transcription	Brain Hippocampus Middle	brain
49	chr17:19670400-19673600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr17:19670400-19673600	Weak transcription	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links