Variant report

Variant	rs57952590
Chromosome Location	chr6:131773045-131773046
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs73627633	1.00[AMR][1000 genomes]
rs73627644	1.00[AMR][1000 genomes]
rs73627646	1.00[AMR][1000 genomes]
rs73627658	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	esv1839224	chr6:131703293-131834119	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2829868	chr6:131729859-131898208	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131771200-131773200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr6:131771600-131773200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:131772200-131773200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr6:131772200-131773200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:131772200-131773400	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr6:131772200-131773400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr6:131772200-131773400	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr6:131772400-131773400	Enhancers	Primary T cells from cord blood	blood
9	chr6:131772400-131773600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr6:131772600-131773200	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr6:131772800-131773200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr6:131773000-131781800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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