The 2.0 version of rSNPBase

Variant report

Variant rs57955749
Chromosome Location chr1:165414131-165414132
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:93 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:165412200-165414800 Active TSS Pancreatic Islets Pancreatic Islet
2 chr1:165412400-165414800 Active TSS Brain Anterior Caudate brain
3 chr1:165412600-165414200 Bivalent Enhancer iPS DF 6.9 Cell Line embryonic stem cell
4 chr1:165412600-165414200 Bivalent Enhancer ES-UCSF4 Cell Line embryonic stem cell
5 chr1:165412800-165414400 Bivalent/Poised TSS Rectal Mucosa Donor 29 rectum
6 chr1:165412800-165414600 Bivalent/Poised TSS Duodenum Smooth Muscle Duodenum
7 chr1:165412800-165414800 Active TSS Foreskin Melanocyte Primary Cells skin01 Skin
8 chr1:165412800-165414800 Active TSS Brain Substantia Nigra brain
9 chr1:165413000-165414200 Bivalent Enhancer Primary T cells fromperipheralblood blood
10 chr1:165413000-165414200 Bivalent Enhancer Fetal Adrenal Gland Adrenal Gland
11 chr1:165413000-165414800 Active TSS Brain Angular Gyrus brain
12 chr1:165413200-165414200 Bivalent Enhancer Primary T helper cells fromperipheralblood blood
13 chr1:165413200-165414200 Flanking Active TSS Cortex derived primary cultured neurospheres brain
14 chr1:165413200-165414400 Active TSS Right Ventricle heart
15 chr1:165413200-165414600 Bivalent Enhancer Primary T helper 17 cells PMA-I stimulated --
16 chr1:165413200-165414600 Enhancers Placenta Placenta
17 chr1:165413200-165414800 Bivalent/Poised TSS HUES6 Cell Line embryonic stem cell
18 chr1:165413200-165414800 Bivalent Enhancer Primary B cells from peripheral blood blood
19 chr1:165413200-165414800 Active TSS Ganglion Eminence derived primary cultured neurospheres brain
20 chr1:165413400-165414200 Flanking Bivalent TSS/Enh HUES64 Cell Line embryonic stem cell
21 chr1:165413400-165414200 Flanking Bivalent TSS/Enh Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
22 chr1:165413400-165414200 Flanking Bivalent TSS/Enh Fetal Brain Male brain
23 chr1:165413400-165414200 Active TSS Fetal Muscle Trunk muscle
24 chr1:165413400-165414200 Active TSS Right Atrium heart
25 chr1:165413400-165414400 Bivalent Enhancer Primary T helper memory cells from peripheral blood 2 blood
26 chr1:165413400-165414400 Flanking Active TSS Adipose Nuclei Adipose
27 chr1:165413400-165414600 Active TSS Psoas Muscle Psoas
28 chr1:165413400-165414800 Bivalent/Poised TSS iPS-20b Cell Line embryonic stem cell
29 chr1:165413400-165414800 Bivalent Enhancer Primary T helper memory cells from peripheral blood 1 blood
30 chr1:165413400-165414800 Active TSS Brain Cingulate Gyrus brain
31 chr1:165413600-165414200 Flanking Bivalent TSS/Enh HUES48 Cell Line embryonic stem cell
32 chr1:165413600-165414200 Flanking Bivalent TSS/Enh iPS-18 Cell Line embryonic stem cell
33 chr1:165413600-165414200 Flanking Bivalent TSS/Enh Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
34 chr1:165413600-165414200 Flanking Active TSS Brain Inferior Temporal Lobe brain
35 chr1:165413600-165414200 Flanking Bivalent TSS/Enh Fetal Lung lung
36 chr1:165413600-165414400 Active TSS HSMMtube muscle
37 chr1:165413600-165414600 Flanking Bivalent TSS/Enh Stomach Smooth Muscle stomach
38 chr1:165413800-165414200 Flanking Bivalent TSS/Enh hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
39 chr1:165413800-165414200 Flanking Bivalent TSS/Enh iPS-15b Cell Line embryonic stem cell
40 chr1:165413800-165414200 Flanking Bivalent TSS/Enh Breast Myoepithelial Primary Cells Breast
41 chr1:165413800-165414200 Flanking Bivalent TSS/Enh Primary T killer naive cells fromperipheralblood blood
42 chr1:165413800-165414200 Bivalent Enhancer Primary mononuclear cells fromperipheralblood Blood
43 chr1:165413800-165414200 Bivalent Enhancer Liver Liver
44 chr1:165413800-165414200 Flanking Active TSS Brain Hippocampus Middle brain
45 chr1:165413800-165414200 Flanking Bivalent TSS/Enh Fetal Brain Female brain
46 chr1:165413800-165414200 Flanking Active TSS Skeletal Muscle Female skeletal muscle
47 chr1:165413800-165414200 Bivalent Enhancer NHDF-Ad bronchial
48 chr1:165413800-165414400 Bivalent Enhancer H9 Derived Neuron Cultured Cells ES cell derived
49 chr1:165413800-165414400 Flanking Active TSS Fetal Heart heart
50 chr1:165413800-165414400 Bivalent/Poised TSS Fetal Intestine Large intestine

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Last update: Aug 31, 2015