Variant report

Variant	rs57957741
Chromosome Location	chr4:103164166-103164167
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs151368	0.86[ASN][1000 genomes]
rs151369	0.86[ASN][1000 genomes]
rs151372	0.86[ASN][1000 genomes]
rs151388	0.86[ASN][1000 genomes]
rs151392	0.86[ASN][1000 genomes]
rs151393	0.86[ASN][1000 genomes]
rs151394	0.86[ASN][1000 genomes]
rs151395	0.86[ASN][1000 genomes]
rs151396	0.86[ASN][1000 genomes]
rs151397	0.86[ASN][1000 genomes]
rs151398	0.85[ASN][1000 genomes]
rs151399	0.81[ASN][1000 genomes]
rs151400	0.81[ASN][1000 genomes]
rs17032400	0.82[ASN][1000 genomes]
rs189215	0.86[ASN][1000 genomes]
rs367659	0.86[ASN][1000 genomes]
rs426642	0.86[ASN][1000 genomes]
rs439757	0.86[ASN][1000 genomes]
rs450780	0.86[ASN][1000 genomes]
rs456877	0.86[ASN][1000 genomes]
rs458318	0.86[ASN][1000 genomes]
rs458771	0.86[ASN][1000 genomes]
rs458779	0.86[ASN][1000 genomes]
rs460670	0.86[ASN][1000 genomes]
rs460800	0.86[ASN][1000 genomes]
rs462060	0.86[ASN][1000 genomes]
rs462178	0.86[ASN][1000 genomes]
rs463373	0.86[ASN][1000 genomes]
rs463661	0.86[ASN][1000 genomes]
rs464114	0.86[ASN][1000 genomes]
rs464969	0.86[ASN][1000 genomes]
rs4698843	0.86[ASN][1000 genomes]
rs4699006	0.83[ASN][1000 genomes]
rs651551	0.86[ASN][1000 genomes]
rs657521	0.86[ASN][1000 genomes]
rs657581	0.86[ASN][1000 genomes]
rs6832846	0.86[ASN][1000 genomes]
rs685213	0.86[ASN][1000 genomes]
rs9331	0.86[ASN][1000 genomes]
rs9705	0.86[ASN][1000 genomes]
rs9992479	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869164	chr4:102483189-103213842	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv428447	chr4:103103730-103262107	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1008680	chr4:103153709-103206555	Strong transcription Weak transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1011868	chr4:103158581-103206555	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv999012	chr4:103162076-103206555	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103156000-103170200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:103161600-103166000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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