Variant report

Variant	rs57960011
Chromosome Location	chr13:89577772-89577773
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1832259	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41443945	0.90[AFR][1000 genomes]
rs41478745	0.90[AFR][1000 genomes]
rs4369519	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4573801	0.83[AFR][1000 genomes]
rs60920942	0.87[AFR][1000 genomes]
rs7325384	0.85[AFR][1000 genomes]
rs7329082	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7329725	0.83[AFR][1000 genomes]
rs7331144	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7331975	0.83[AFR][1000 genomes]
rs73577943	0.85[AFR][1000 genomes]
rs73588235	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73588274	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73588285	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73588288	0.80[AFR][1000 genomes]
rs73588292	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73590225	0.83[AFR][1000 genomes]
rs73590241	1.00[AMR][1000 genomes]
rs73590244	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73590290	0.83[AFR][1000 genomes]
rs73590294	0.95[AFR][1000 genomes]
rs73590296	0.83[AFR][1000 genomes]
rs73592132	0.95[AFR][1000 genomes]
rs73592133	0.83[AFR][1000 genomes]
rs73594035	0.83[AFR][1000 genomes]
rs7984249	0.81[AFR][1000 genomes]
rs7997170	0.83[AFR][1000 genomes]
rs7999389	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900820	chr13:89302824-89686507	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv900821	chr13:89302824-89941209	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv915862	chr13:89408920-90118030	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2758339	chr13:89411081-89875974	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2759957	chr13:89411081-89875974	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv900826	chr13:89466123-89686507	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv900828	chr13:89474702-89642526	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv915623	chr13:89476229-89668705	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv900831	chr13:89477369-89610815	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv826739	chr13:89477707-89830601	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv900835	chr13:89502819-89610815	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv900839	chr13:89510330-89637081	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	esv34578	chr13:89515664-89822799	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv900840	chr13:89516104-89686507	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv900841	chr13:89523570-89622192	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv1043687	chr13:89523570-89673179	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	nsv900842	chr13:89529847-89622192	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	esv2757546	chr13:89539415-89864593	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:89577400-89578200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:89577600-89578200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr13:89577600-89578600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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