Variant report

Variant	rs57962467
Chromosome Location	chr3:98662428-98662429
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10084679	0.82[ASN][1000 genomes]
rs13317610	0.94[ASN][1000 genomes]
rs13320266	0.94[ASN][1000 genomes]
rs13322253	0.94[ASN][1000 genomes]
rs2449044	0.97[AFR][1000 genomes]
rs28417568	0.82[ASN][1000 genomes]
rs28489284	0.82[ASN][1000 genomes]
rs2929492	0.97[AFR][1000 genomes]
rs3796133	0.82[ASN][1000 genomes]
rs56172805	0.94[ASN][1000 genomes]
rs56694316	0.97[AFR][1000 genomes]
rs56857413	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59906228	0.94[ASN][1000 genomes]
rs72934623	0.82[ASN][1000 genomes]
rs72936636	1.00[EUR][1000 genomes]
rs72936671	1.00[AMR][1000 genomes]
rs72936680	1.00[AMR][1000 genomes]
rs72938540	0.89[AFR][1000 genomes]
rs72938577	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9810407	0.94[ASN][1000 genomes]
rs9812438	0.82[ASN][1000 genomes]
rs9818215	0.94[ASN][1000 genomes]
rs9833945	0.94[ASN][1000 genomes]
rs9836437	0.94[ASN][1000 genomes]
rs9836915	0.94[ASN][1000 genomes]
rs9838166	0.94[ASN][1000 genomes]
rs9838238	0.94[ASN][1000 genomes]
rs9838706	0.82[ASN][1000 genomes]
rs9848583	0.94[ASN][1000 genomes]
rs9862660	0.82[ASN][1000 genomes]
rs9883751	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591065	chr3:98204198-98766326	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv877214	chr3:98445324-98738006	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:98643000-98663800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:98662000-98662600	Enhancers	A549	lung
3	chr3:98662200-98663200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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